Gene annotation
Transcriptome id Sobic.004G252100.1
Synonym Sb04g029160
Functional annotation ribosomal protein L7Ae, putative, expressed
UniProt C5XZE5
Pfam PF01248
Panther DB PTHR23105 PTHR23105:SF61
NCBI CDD KOG3167; Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation
KEGG Orthology K11129; NHP2, H/ACA ribonucleoprotein complex subunit 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08180 : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
RAP-DB (Rice) LOC_Os06g16290.1 : ribosomal protein L7Ae, putative, expressed
MaizeGDB (Corn) Zm00025a032626 , Zm00025a021892
Brachypodium -
Barley HORVU6Hr1G072650.2 , HORVU6Hr1G072650.3
Wheat TraesCS6B02G319800 , TraesCS6A02G289600 , TraesCS6D02G269300
Populus -


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cDNA sequences
Sobic.004G252100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
2 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
3 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
4 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
5 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
6 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
7 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
8 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
9 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
10 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
11 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
12 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
13 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
14 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
15 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
16 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
17 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
18 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
19 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
20 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e


Gene co-expression network
sample Sobic004G252100 Sobic004G252100 Sobic001G016500 Sobic001G016500 Sobic004G252100--Sobic001G016500 Sobic005G019700 Sobic005G019700 Sobic004G252100--Sobic005G019700 Sobic006G116700 Sobic006G116700 Sobic004G252100--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic004G252100--Sobic001G018900 Sobic007G019000 Sobic007G019000 Sobic004G252100--Sobic007G019000 Sobic007G190800 Sobic007G190800 Sobic004G252100--Sobic007G190800 Sobic001G533500 Sobic001G533500 Sobic004G252100--Sobic001G533500 Sobic009G050300 Sobic009G050300 Sobic004G252100--Sobic009G050300 Sobic007G197800 Sobic007G197800 Sobic004G252100--Sobic007G197800 Sobic001G016500--Sobic009G050300 Sobic001G016500--Sobic006G116700 Sobic002G081600 Sobic002G081600 Sobic001G016500--Sobic002G081600 Sobic002G379500 Sobic002G379500 Sobic001G016500--Sobic002G379500 Sobic003G346600 Sobic003G346600 Sobic001G016500--Sobic003G346600 Sobic001G016500--Sobic001G018900 Sobic001G016400 Sobic001G016400 Sobic001G016500--Sobic001G016400 Sobic004G008400 Sobic004G008400 Sobic001G016500--Sobic004G008400 Sobic001G016500--Sobic007G197800 Sobic010G230700 Sobic010G230700 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic007G018300 Sobic007G018300 Sobic005G019700--Sobic007G018300 Sobic009G054800 Sobic009G054800 Sobic005G019700--Sobic009G054800 Sobic005G019700--Sobic006G116700 Sobic001G091801 Sobic001G091801 Sobic005G019700--Sobic001G091801 Sobic005G019700--Sobic007G197800 Sobic003G078200 Sobic003G078200 Sobic005G019700--Sobic003G078200 Sobic010G206200 Sobic010G206200 Sobic005G019700--Sobic010G206200 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic009G215200 Sobic009G215200 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic001G130301 Sobic001G130301 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G018900--Sobic001G130301 Sobic001G018900--Sobic001G016400 Sobic003G408100 Sobic003G408100 Sobic001G018900--Sobic003G408100 Sobic007G178600 Sobic007G178600 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic007G019000--Sobic001G533500 Sobic007G190800--Sobic010G230700 Sobic007G190800--Sobic005G019700 Sobic004G104100 Sobic004G104100 Sobic007G190800--Sobic004G104100 Sobic007G190800--Sobic009G050300 Sobic004G104300 Sobic004G104300 Sobic007G190800--Sobic004G104300 Sobic007G190800--Sobic007G019000 Sobic007G190800--Sobic007G018300 Sobic007G212600 Sobic007G212600 Sobic007G190800--Sobic007G212600 Sobic001G403500 Sobic001G403500 Sobic007G190800--Sobic001G403500 Sobic001G533500--Sobic007G019000 Sobic001G533500--Sobic007G018300 Sobic001G533500--Sobic010G230700 Sobic001G533500--Sobic001G054900 Sobic001G533500--Sobic009G050300 Sobic001G533500--Sobic007G178600 Sobic001G533500--Sobic006G116700 Sobic001G533500--Sobic004G104100 Sobic001G533500--Sobic004G008400 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic001G402050 Sobic001G402050 Sobic007G197800--Sobic001G402050 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400
Octagon: transcription factors


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