Gene annotation
Transcriptome id Sobic.001G128400.1
Synonym PRCGB, Sb01g011260, PBD1
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5WNX2
Pfam PF00227
Panther DB PTHR11599 PTHR11599:SF6
NCBI CDD KOG0177; 20S proteasome, regulatory subunit beta type PSMB2/PRE1
KEGG Orthology K02734; 20S proteasome subunit beta 4
Gene Ontology GO:0005839; proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G22630 : 20S proteasome beta subunit D1
RAP-DB (Rice) LOC_Os03g48930.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a007691 , Zm00025a017070
Brachypodium KQK13685
Barley HORVU0Hr1G040340.1
Wheat TraesCS4B02G035400 , TraesCS4D02G033400 , TraesCS4A02G277700
Populus -


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cDNA sequences
Sobic.001G128400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
2 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
3 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
4 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
5 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
6 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
7 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
8 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
9 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
10 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
11 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
12 Sobic.009G232900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
13 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
14 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9
15 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
16 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
17 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
18 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
19 Sobic.001G134400 CHCH domain containing protein, expressed -
20 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e


Gene co-expression network
sample Sobic001G128400 Sobic001G128400 Sobic005G111100 Sobic005G111100 Sobic001G128400--Sobic005G111100 Sobic003G129800 Sobic003G129800 Sobic001G128400--Sobic003G129800 Sobic010G204500 Sobic010G204500 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic010G054200 Sobic010G054200 Sobic001G128400--Sobic010G054200 Sobic003G280700 Sobic003G280700 Sobic001G128400--Sobic003G280700 Sobic003G109600 Sobic003G109600 Sobic001G128400--Sobic003G109600 Sobic005G111100--Sobic001G128400 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic005G111100--Sobic010G054200 Sobic006G231700 Sobic006G231700 Sobic005G111100--Sobic006G231700 Sobic002G218000 Sobic002G218000 Sobic005G111100--Sobic002G218000 Sobic003G129800--Sobic001G128400 Sobic003G129800--Sobic005G111100 Sobic002G304900 Sobic002G304900 Sobic003G129800--Sobic002G304900 Sobic003G129800--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic003G129800--Sobic001G058900 Sobic001G513500 Sobic001G513500 Sobic003G129800--Sobic001G513500 Sobic009G223300 Sobic009G223300 Sobic003G129800--Sobic009G223300 Sobic003G129800--Sobic004G066800 Sobic005G050500 Sobic005G050500 Sobic003G129800--Sobic005G050500 Sobic001G403500 Sobic001G403500 Sobic010G204500--Sobic001G403500 Sobic001G483100 Sobic001G483100 Sobic010G204500--Sobic001G483100 Sobic001G016400 Sobic001G016400 Sobic010G204500--Sobic001G016400 Sobic009G050300 Sobic009G050300 Sobic010G204500--Sobic009G050300 Sobic009G180000 Sobic009G180000 Sobic010G204500--Sobic009G180000 Sobic002G056200 Sobic002G056200 Sobic010G204500--Sobic002G056200 Sobic002G081600 Sobic002G081600 Sobic010G204500--Sobic002G081600 Sobic009G215200 Sobic009G215200 Sobic010G204500--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic010G204500--Sobic001G018900 Sobic006G081100--Sobic003G249700 Sobic008G108601 Sobic008G108601 Sobic006G081100--Sobic008G108601 Sobic005G019700 Sobic005G019700 Sobic006G081100--Sobic005G019700 Sobic001G091801 Sobic001G091801 Sobic006G081100--Sobic001G091801 Sobic006G221200 Sobic006G221200 Sobic006G081100--Sobic006G221200 Sobic002G047600 Sobic002G047600 Sobic006G081100--Sobic002G047600 Sobic006G081100--Sobic009G050300 Sobic010G230700 Sobic010G230700 Sobic006G081100--Sobic010G230700 Sobic001G225700 Sobic001G225700 Sobic006G081100--Sobic001G225700 Sobic007G019400 Sobic007G019400 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic004G008400 Sobic004G008400 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G249700--Sobic003G109600 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic002G049300--Sobic008G108601 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic006G137100 Sobic006G137100 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic010G054200--Sobic006G081100 Sobic010G054200--Sobic003G249700 Sobic010G054200--Sobic001G058900 Sobic010G054200--Sobic009G223300 Sobic010G054200--Sobic003G129800 Sobic010G054200--Sobic001G225700 Sobic009G233400 Sobic009G233400 Sobic010G054200--Sobic009G233400 Sobic003G150000 Sobic003G150000 Sobic010G054200--Sobic003G150000 Sobic002G372400 Sobic002G372400 Sobic010G054200--Sobic002G372400 Sobic003G280700--Sobic002G049300 Sobic001G011200 Sobic001G011200 Sobic003G280700--Sobic001G011200 Sobic003G280700--Sobic006G081100 Sobic003G280700--Sobic005G050500 Sobic003G280700--Sobic001G085400 Sobic004G198400 Sobic004G198400 Sobic003G280700--Sobic004G198400 Sobic003G280700--Sobic002G056200 Sobic003G280700--Sobic009G022400 Sobic003G280700--Sobic001G403500 Sobic002G379500 Sobic002G379500 Sobic003G109600--Sobic002G379500 Sobic003G109600--Sobic009G223300 Sobic003G109600--Sobic001G403500 Sobic003G109600--Sobic001G039400 Sobic003G109600--Sobic003G249700 Sobic003G109600--Sobic002G056200 Sobic003G109600--Sobic002G047600 Sobic003G109600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic003G109600--Sobic003G436700
Octagon: transcription factors


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