Gene annotation
Transcriptome id Sobic.010G054200.1
Synonym PAC1
Functional annotation peptidase, T1 family, putative, expressed
UniProt A0A1W0VRK7
Pfam PF10584 PF00227
Panther DB PTHR11599 PTHR11599:SF13
NCBI CDD KOG0178; 20S proteasome, regulatory subunit alpha type PSMA4/PRE9
KEGG Orthology K02728; 20S proteasome subunit alpha 3
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0004175endopeptidase activity GO:0005839proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G22110 : 20S proteasome alpha subunit C1
RAP-DB (Rice) LOC_Os06g07140.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a049895 , Zm00025a041660
Brachypodium PNT76404 , KQK19424 , KQK19359
Barley HORVU7Hr1G027220.4 , HORVU7Hr1G027220.2 , HORVU7Hr1G027220.3
Wheat -
Populus -


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cDNA sequences
Sobic.010G054200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
2 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
3 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
4 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
5 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
6 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
7 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
8 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
9 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
10 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
11 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
12 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
13 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
14 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
15 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
16 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e
17 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
18 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
19 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
20 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e


Gene co-expression network
sample Sobic010G054200 Sobic010G054200 Sobic006G081100 Sobic006G081100 Sobic010G054200--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic010G054200--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic010G054200--Sobic001G058900 Sobic009G223300 Sobic009G223300 Sobic010G054200--Sobic009G223300 Sobic003G129800 Sobic003G129800 Sobic010G054200--Sobic003G129800 Sobic001G225700 Sobic001G225700 Sobic010G054200--Sobic001G225700 Sobic009G233400 Sobic009G233400 Sobic010G054200--Sobic009G233400 Sobic003G150000 Sobic003G150000 Sobic010G054200--Sobic003G150000 Sobic002G372400 Sobic002G372400 Sobic010G054200--Sobic002G372400 Sobic006G081100--Sobic003G249700 Sobic008G108601 Sobic008G108601 Sobic006G081100--Sobic008G108601 Sobic005G019700 Sobic005G019700 Sobic006G081100--Sobic005G019700 Sobic001G091801 Sobic001G091801 Sobic006G081100--Sobic001G091801 Sobic006G221200 Sobic006G221200 Sobic006G081100--Sobic006G221200 Sobic002G047600 Sobic002G047600 Sobic006G081100--Sobic002G047600 Sobic009G050300 Sobic009G050300 Sobic006G081100--Sobic009G050300 Sobic010G230700 Sobic010G230700 Sobic006G081100--Sobic010G230700 Sobic006G081100--Sobic001G225700 Sobic007G019400 Sobic007G019400 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic004G008400 Sobic004G008400 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic002G304900 Sobic002G304900 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic002G049300 Sobic002G049300 Sobic001G058900--Sobic002G049300 Sobic001G058900--Sobic003G249700 Sobic001G334300 Sobic001G334300 Sobic001G058900--Sobic001G334300 Sobic009G223300--Sobic003G109600 Sobic009G223300--Sobic002G372400 Sobic002G379500 Sobic002G379500 Sobic009G223300--Sobic002G379500 Sobic007G018300 Sobic007G018300 Sobic009G223300--Sobic007G018300 Sobic009G223300--Sobic010G230700 Sobic010G076400 Sobic010G076400 Sobic009G223300--Sobic010G076400 Sobic004G198400 Sobic004G198400 Sobic009G223300--Sobic004G198400 Sobic009G223300--Sobic009G233400 Sobic009G223300--Sobic001G039400 Sobic001G128400 Sobic001G128400 Sobic003G129800--Sobic001G128400 Sobic005G111100 Sobic005G111100 Sobic003G129800--Sobic005G111100 Sobic003G129800--Sobic002G304900 Sobic003G129800--Sobic003G249700 Sobic003G129800--Sobic001G058900 Sobic001G513500 Sobic001G513500 Sobic003G129800--Sobic001G513500 Sobic003G129800--Sobic009G223300 Sobic004G066800 Sobic004G066800 Sobic003G129800--Sobic004G066800 Sobic005G050500 Sobic005G050500 Sobic003G129800--Sobic005G050500 Sobic001G225700--Sobic003G249700 Sobic001G225700--Sobic006G081100 Sobic001G225700--Sobic008G108601 Sobic001G225700--Sobic007G178600 Sobic001G225700--Sobic002G047600 Sobic002G286900 Sobic002G286900 Sobic001G225700--Sobic002G286900 Sobic001G225700--Sobic002G049300 Sobic010G251600 Sobic010G251600 Sobic001G225700--Sobic010G251600 Sobic001G225700--Sobic002G115000 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic009G233400--Sobic010G069400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic010G204500 Sobic010G204500 Sobic003G150000--Sobic010G204500 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic001G054900 Sobic001G054900 Sobic003G150000--Sobic001G054900 Sobic003G150000--Sobic009G050300 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800 Sobic003G078200 Sobic003G078200 Sobic002G372400--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic002G372400--Sobic009G054800 Sobic002G372400--Sobic010G076400 Sobic002G372400--Sobic010G230700 Sobic002G372400--Sobic007G018300 Sobic002G372400--Sobic005G019700 Sobic002G372400--Sobic009G223300 Sobic002G372400--Sobic009G050300 Sobic002G372400--Sobic004G198400
Octagon: transcription factors


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