Gene annotation
Transcriptome id Sobic.005G111100.1
Synonym ASK2, SKP1B, Sb05g012740
Functional annotation SKP1-like protein 1B, putative, expressed
UniProt C5Y273
Pfam PF03931 PF01466
Panther DB PTHR11165
NCBI CDD KOG1724; SCF ubiquitin ligase, Skp1 component
KEGG Orthology K03094; SKP1, S-phase kinase-associated protein 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT5G42190 : E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
RAP-DB (Rice) LOC_Os11g26910.1 : SKP1-like protein 1B, putative, expressed
MaizeGDB (Corn) Zm00025a015845 , Zm00025a018627 , Zm00025a015850 , Zm00025a015846 , Zm00025a015852 , Zm00025a029772 , Zm00025a015913
Brachypodium KQJ99541 , KQJ92734 , KQJ88553
Barley HORVU6Hr1G000660.1 , HORVU6Hr1G000640.14 , HORVU6Hr1G000640.15 , HORVU6Hr1G000640.16 , HORVU6Hr1G000640.17 , HORVU6Hr1G000640.13 , HORVU6Hr1G000640.18 , HORVU6Hr1G000640.19 , HORVU7Hr1G002220.5 , HORVU7Hr1G002220.4 , HORVU7Hr1G002220.3 , HORVU7Hr1G002220.2 , HORVU7Hr1G002220.1 , HORVU6Hr1G000640.21 , HORVU6Hr1G000640.20 , HORVU6Hr1G000640.23 , HORVU6Hr1G000640.22 , HORVU6Hr1G000640.24 , HORVU6Hr1G000660.2
Wheat TraesCS4A02G472600 , TraesCS6A02G000300 , TraesCS5D02G105800 , TraesCS3B02G027600 , TraesCS5B02G331700 , TraesCS7A02G020600 , TraesCS7D02G016900 , TraesCS5D02G337200 , TraesCS6B02G008800 , TraesCS6D02G001600 , TraesCS6D02G002600 , TraesCS6B02G004300 , TraesCS4A02G379700 , TraesCS5A02G331300
Populus -


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cDNA sequences
Sobic.005G111100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
2 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
3 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
4 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
5 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
6 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
7 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
8 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
9 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
10 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
11 Sobic.001G014500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
12 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
13 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9
14 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
15 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
16 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
17 Sobic.002G116200 adenylate kinase isoenzyme 6, putative, expressed K18532: AK6, adenylate kinase
18 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
19 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
20 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e


Gene co-expression network
sample Sobic005G111100 Sobic005G111100 Sobic001G128400 Sobic001G128400 Sobic005G111100--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic006G231700 Sobic006G231700 Sobic005G111100--Sobic006G231700 Sobic002G218000 Sobic002G218000 Sobic005G111100--Sobic002G218000 Sobic001G128400--Sobic005G111100 Sobic001G128400--Sobic003G129800 Sobic010G204500 Sobic010G204500 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic001G128400--Sobic010G054200 Sobic001G128400--Sobic003G280700 Sobic003G109600 Sobic003G109600 Sobic001G128400--Sobic003G109600 Sobic003G129800--Sobic001G128400 Sobic003G129800--Sobic005G111100 Sobic002G304900 Sobic002G304900 Sobic003G129800--Sobic002G304900 Sobic003G129800--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic003G129800--Sobic001G058900 Sobic001G513500 Sobic001G513500 Sobic003G129800--Sobic001G513500 Sobic009G223300 Sobic009G223300 Sobic003G129800--Sobic009G223300 Sobic003G129800--Sobic004G066800 Sobic005G050500 Sobic005G050500 Sobic003G129800--Sobic005G050500 Sobic001G517600 Sobic001G517600 Sobic004G032000--Sobic001G517600 Sobic004G032000--Sobic003G129800 Sobic004G032000--Sobic005G111100 Sobic004G032000--Sobic001G128400 Sobic004G032000--Sobic009G223300 Sobic009G191200 Sobic009G191200 Sobic004G032000--Sobic009G191200 Sobic008G135000 Sobic008G135000 Sobic004G032000--Sobic008G135000 Sobic004G032000--Sobic003G109600 Sobic004G032000--Sobic005G050500 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic004G066800--Sobic005G111100 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic004G066800--Sobic009G191200 Sobic003G280700--Sobic002G049300 Sobic001G011200 Sobic001G011200 Sobic003G280700--Sobic001G011200 Sobic003G280700--Sobic006G081100 Sobic003G280700--Sobic005G050500 Sobic001G085400 Sobic001G085400 Sobic003G280700--Sobic001G085400 Sobic004G198400 Sobic004G198400 Sobic003G280700--Sobic004G198400 Sobic002G056200 Sobic002G056200 Sobic003G280700--Sobic002G056200 Sobic009G022400 Sobic009G022400 Sobic003G280700--Sobic009G022400 Sobic001G403500 Sobic001G403500 Sobic003G280700--Sobic001G403500 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic010G054200--Sobic006G081100 Sobic010G054200--Sobic003G249700 Sobic010G054200--Sobic001G058900 Sobic010G054200--Sobic009G223300 Sobic010G054200--Sobic003G129800 Sobic001G225700 Sobic001G225700 Sobic010G054200--Sobic001G225700 Sobic009G233400 Sobic009G233400 Sobic010G054200--Sobic009G233400 Sobic003G150000 Sobic003G150000 Sobic010G054200--Sobic003G150000 Sobic002G372400 Sobic002G372400 Sobic010G054200--Sobic002G372400 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G013900 Sobic006G013900 Sobic006G231700--Sobic006G013900 Sobic003G358300 Sobic003G358300 Sobic006G231700--Sobic003G358300 Sobic006G231700--Sobic001G128400 Sobic006G231700--Sobic003G129800 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900 Sobic009G180000 Sobic009G180000 Sobic002G218000--Sobic009G180000 Sobic006G141500 Sobic006G141500 Sobic002G218000--Sobic006G141500 Sobic003G249800 Sobic003G249800 Sobic002G218000--Sobic003G249800 Sobic002G218000--Sobic010G204500 Sobic002G218000--Sobic005G111100 Sobic001G066700 Sobic001G066700 Sobic002G218000--Sobic001G066700 Sobic010G106200 Sobic010G106200 Sobic002G218000--Sobic010G106200 Sobic010G243200 Sobic010G243200 Sobic002G218000--Sobic010G243200 Sobic002G330000 Sobic002G330000 Sobic002G218000--Sobic002G330000
Octagon: transcription factors


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