Gene annotation
Transcriptome id Sobic.002G331300.1
Synonym Sb02g035760
Functional annotation 60S ribosomal protein L38, putative, expressed
UniProt C5XAV0
Pfam PF01781
Panther DB PTHR10965 PTHR10965:SF2
NCBI CDD KOG3499; 60S ribosomal protein L38
KEGG Orthology K02923; RP-L38e, large subunit ribosomal protein L38e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G59540 : Ribosomal L38e protein family
RAP-DB (Rice) LOC_Os11g24610.1 : 60S ribosomal protein L38, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK15851
Barley HORVU2Hr1G043220.1 , HORVU2Hr1G043220.3 , HORVU2Hr1G043220.2 , HORVU3Hr1G078430.2 , HORVU3Hr1G078430.1
Wheat TraesCS3B02G578700 , TraesCS3A02G509300 , TraesCS3D02G517900 , TraesCS3B02G456100
Populus -


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cDNA sequences
Sobic.002G331300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
2 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
3 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
4 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
5 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
6 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
7 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
8 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
9 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
10 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
11 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
12 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
13 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
14 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
15 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
16 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
17 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
18 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
19 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
20 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e


Gene co-expression network
sample Sobic002G331300 Sobic002G331300 Sobic006G115000 Sobic006G115000 Sobic002G331300--Sobic006G115000 Sobic005G050500 Sobic005G050500 Sobic002G331300--Sobic005G050500 Sobic003G129800 Sobic003G129800 Sobic002G331300--Sobic003G129800 Sobic009G179100 Sobic009G179100 Sobic002G331300--Sobic009G179100 Sobic004G342400 Sobic004G342400 Sobic002G331300--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic002G331300--Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic002G331300--Sobic009G233400 Sobic009G227400 Sobic009G227400 Sobic002G331300--Sobic009G227400 Sobic010G023900 Sobic010G023900 Sobic002G331300--Sobic010G023900 Sobic003G018600 Sobic003G018600 Sobic006G115000--Sobic003G018600 Sobic002G286900 Sobic002G286900 Sobic006G115000--Sobic002G286900 Sobic006G115000--Sobic010G023900 Sobic006G115000--Sobic009G233400 Sobic003G249700 Sobic003G249700 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G137100 Sobic006G137100 Sobic006G115000--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic006G115000--Sobic003G387900 Sobic006G115000--Sobic002G331300 Sobic002G304900 Sobic002G304900 Sobic005G050500--Sobic002G304900 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic002G056200 Sobic002G056200 Sobic005G050500--Sobic002G056200 Sobic001G039400 Sobic001G039400 Sobic005G050500--Sobic001G039400 Sobic005G050500--Sobic003G387900 Sobic005G050500--Sobic001G334300 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic001G128400 Sobic001G128400 Sobic003G129800--Sobic001G128400 Sobic005G111100 Sobic005G111100 Sobic003G129800--Sobic005G111100 Sobic003G129800--Sobic002G304900 Sobic003G129800--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic003G129800--Sobic001G058900 Sobic001G513500 Sobic001G513500 Sobic003G129800--Sobic001G513500 Sobic009G223300 Sobic009G223300 Sobic003G129800--Sobic009G223300 Sobic004G066800 Sobic004G066800 Sobic003G129800--Sobic004G066800 Sobic003G129800--Sobic005G050500 Sobic009G179100--Sobic002G304900 Sobic009G101700 Sobic009G101700 Sobic009G179100--Sobic009G101700 Sobic009G179100--Sobic004G342400 Sobic009G179100--Sobic001G334300 Sobic009G179100--Sobic005G050500 Sobic009G179100--Sobic009G233400 Sobic009G179100--Sobic003G387900 Sobic009G179100--Sobic001G039400 Sobic009G173500 Sobic009G173500 Sobic009G179100--Sobic009G173500 Sobic004G342400--Sobic010G023900 Sobic004G342400--Sobic009G179100 Sobic004G342400--Sobic001G334300 Sobic009G144300 Sobic009G144300 Sobic004G342400--Sobic009G144300 Sobic004G342400--Sobic009G101700 Sobic004G342400--Sobic009G233400 Sobic004G342400--Sobic002G304900 Sobic004G342400--Sobic003G387900 Sobic004G342400--Sobic009G173500 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic001G334300--Sobic003G387900 Sobic001G334300--Sobic009G144300 Sobic001G085400 Sobic001G085400 Sobic001G334300--Sobic001G085400 Sobic001G334300--Sobic009G179100 Sobic001G334300--Sobic009G227400 Sobic001G334300--Sobic005G050500 Sobic002G049300 Sobic002G049300 Sobic001G334300--Sobic002G049300 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic009G233400--Sobic010G069400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic009G227400--Sobic001G334300 Sobic009G227400--Sobic009G144300 Sobic009G227400--Sobic006G137100 Sobic009G227400--Sobic002G286900 Sobic009G076400 Sobic009G076400 Sobic009G227400--Sobic009G076400 Sobic009G227400--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G227400--Sobic002G255100 Sobic009G227400--Sobic010G023900 Sobic009G227400--Sobic003G387900 Sobic010G023900--Sobic004G342400 Sobic010G023900--Sobic001G334300 Sobic010G023900--Sobic009G227400 Sobic010G023900--Sobic002G286900 Sobic010G023900--Sobic003G387900 Sobic010G023900--Sobic009G179100 Sobic010G023900--Sobic009G233400 Sobic006G213000 Sobic006G213000 Sobic010G023900--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic010G023900--Sobic001G226500
Octagon: transcription factors


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