Gene annotation
Transcriptome id Sobic.009G144300.1
Synonym Sb09g020940
Functional annotation ribosomal protein L7Ae, putative, expressed
UniProt C5YY90
Pfam PF01248
Panther DB PTHR11843
NCBI CDD KOG3406; 40S ribosomal protein S12
KEGG Orthology K02951; RP-S12e, small subunit ribosomal protein S12e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G32060 : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
RAP-DB (Rice) LOC_Os07g05580.1 : ribosomal protein L7Ae, putative, expressed
MaizeGDB (Corn) Zm00025a037352 , Zm00025a013380 , Zm00025a044677 , Zm00025a045440
Brachypodium -
Barley HORVU2Hr1G053290.11 , HORVU2Hr1G053290.10 , HORVU2Hr1G053290.9 , HORVU2Hr1G053290.8 , HORVU2Hr1G053290.5 , HORVU2Hr1G053290.4 , HORVU2Hr1G053290.7 , HORVU2Hr1G053290.6 , HORVU2Hr1G053290.1 , HORVU2Hr1G053290.3 , HORVU2Hr1G053290.2
Wheat TraesCS2A02G228800 , TraesCS2B02G262700 , TraesCS2D02G237800
Populus -


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cDNA sequences
Sobic.009G144300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
2 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
3 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
4 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
5 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
6 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
7 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
8 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
9 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
10 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
11 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
12 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
13 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
14 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
15 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
16 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
17 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
18 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
19 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
20 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e


Gene co-expression network
sample Sobic009G144300 Sobic009G144300 Sobic001G334300 Sobic001G334300 Sobic009G144300--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic009G144300--Sobic001G085400 Sobic009G227400 Sobic009G227400 Sobic009G144300--Sobic009G227400 Sobic009G233400 Sobic009G233400 Sobic009G144300--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic009G144300--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic009G144300--Sobic003G387900 Sobic006G216600 Sobic006G216600 Sobic009G144300--Sobic006G216600 Sobic002G049300 Sobic002G049300 Sobic009G144300--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G144300--Sobic002G255100 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic001G334300--Sobic003G387900 Sobic001G334300--Sobic009G144300 Sobic001G334300--Sobic001G085400 Sobic009G179100 Sobic009G179100 Sobic001G334300--Sobic009G179100 Sobic001G334300--Sobic009G227400 Sobic005G050500 Sobic005G050500 Sobic001G334300--Sobic005G050500 Sobic001G334300--Sobic002G049300 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic002G047600 Sobic002G047600 Sobic001G085400--Sobic002G047600 Sobic001G085400--Sobic006G216600 Sobic003G249700 Sobic003G249700 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic007G178600 Sobic007G178600 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic009G227400--Sobic001G334300 Sobic009G227400--Sobic009G144300 Sobic006G137100 Sobic006G137100 Sobic009G227400--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic009G227400--Sobic002G286900 Sobic009G076400 Sobic009G076400 Sobic009G227400--Sobic009G076400 Sobic009G227400--Sobic002G049300 Sobic009G227400--Sobic002G255100 Sobic010G023900 Sobic010G023900 Sobic009G227400--Sobic010G023900 Sobic009G227400--Sobic003G387900 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic009G233400--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic001G058900 Sobic001G058900 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic003G387900--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic003G387900--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic003G387900--Sobic002G379500 Sobic007G019400 Sobic007G019400 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic003G387900--Sobic010G069400 Sobic002G056200 Sobic002G056200 Sobic003G387900--Sobic002G056200 Sobic006G216600--Sobic001G085400 Sobic006G216600--Sobic003G387900 Sobic006G216600--Sobic002G304900 Sobic001G057300 Sobic001G057300 Sobic006G216600--Sobic001G057300 Sobic006G216600--Sobic002G049300 Sobic006G216600--Sobic009G144300 Sobic006G216600--Sobic002G115000 Sobic006G216600--Sobic002G047600 Sobic003G363800 Sobic003G363800 Sobic006G216600--Sobic003G363800 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic008G108601 Sobic008G108601 Sobic002G049300--Sobic008G108601 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic002G049300--Sobic006G137100 Sobic002G049300--Sobic002G286900 Sobic002G255100--Sobic009G227400 Sobic002G255100--Sobic009G144300 Sobic002G255100--Sobic001G334300 Sobic002G255100--Sobic001G085400 Sobic002G255100--Sobic002G049300 Sobic002G255100--Sobic002G304900 Sobic002G255100--Sobic010G023900 Sobic002G255100--Sobic009G233400 Sobic004G216800 Sobic004G216800 Sobic002G255100--Sobic004G216800
Octagon: transcription factors


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