Gene annotation
Transcriptome id Sobic.006G216600.1,Sobic.006G216600.2
Synonym ARP1, RPL3A, Sb06g028650, emb2207, RP1
Functional annotation ribosomal protein L3, putative, expressed
UniProt A0A1B6PN93 , C5YG29
Pfam PF00297
Panther DB PTHR11363
NCBI CDD KOG0746; 60S ribosomal protein L3 and related proteins
KEGG Orthology K02925; RP-L3e, large subunit ribosomal protein L3e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G43170 : ribosomal protein 1
RAP-DB (Rice) LOC_Os12g07010.1 : ribosomal protein L3, putative, expressed
MaizeGDB (Corn) Zm00025a012908 , Zm00025a012903 , Zm00025a011404 , Zm00025a011411 , Zm00025a009976 , Zm00025a009766 , Zm00025a001852
Brachypodium KQJ89277 , KQJ92105
Barley HORVU5Hr1G036630.1 , HORVU5Hr1G036630.3 , HORVU5Hr1G036630.2 , HORVU4Hr1G019980.1 , HORVU4Hr1G019980.2
Wheat TraesCS5B02G118400 , TraesCS5A02G112400 , TraesCS4A02G208000 , TraesCS4B02G111500 , TraesCS4D02G109200 , TraesCS5D02G129200
Populus PNT43008 , PNT43000 , PNT43007 , PNT43006 , PNT42996 , PNT42997 , PNT42998 , PNT42999


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cDNA sequences
Sobic.006G216600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
2 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
3 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
4 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
5 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
6 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
7 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
8 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
9 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
10 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
11 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
12 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
13 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
14 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
15 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
16 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
17 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
18 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
19 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
20 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e


Gene co-expression network
sample Sobic006G216600 Sobic006G216600 Sobic001G085400 Sobic001G085400 Sobic006G216600--Sobic001G085400 Sobic003G387900 Sobic003G387900 Sobic006G216600--Sobic003G387900 Sobic002G304900 Sobic002G304900 Sobic006G216600--Sobic002G304900 Sobic001G057300 Sobic001G057300 Sobic006G216600--Sobic001G057300 Sobic002G049300 Sobic002G049300 Sobic006G216600--Sobic002G049300 Sobic009G144300 Sobic009G144300 Sobic006G216600--Sobic009G144300 Sobic002G115000 Sobic002G115000 Sobic006G216600--Sobic002G115000 Sobic002G047600 Sobic002G047600 Sobic006G216600--Sobic002G047600 Sobic003G363800 Sobic003G363800 Sobic006G216600--Sobic003G363800 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic001G085400--Sobic006G216600 Sobic003G249700 Sobic003G249700 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic007G178600 Sobic007G178600 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic006G137100 Sobic006G137100 Sobic003G387900--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic003G387900--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic003G387900--Sobic002G379500 Sobic007G019400 Sobic007G019400 Sobic003G387900--Sobic007G019400 Sobic009G076400 Sobic009G076400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic010G069400 Sobic010G069400 Sobic003G387900--Sobic010G069400 Sobic002G056200 Sobic002G056200 Sobic003G387900--Sobic002G056200 Sobic002G304900--Sobic001G085400 Sobic009G233400 Sobic009G233400 Sobic002G304900--Sobic009G233400 Sobic001G058900 Sobic001G058900 Sobic002G304900--Sobic001G058900 Sobic001G334300 Sobic001G334300 Sobic002G304900--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic002G304900--Sobic009G179100 Sobic005G050500 Sobic005G050500 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic002G304900--Sobic001G039400 Sobic001G057300--Sobic006G216600 Sobic001G057300--Sobic002G304900 Sobic008G135000 Sobic008G135000 Sobic001G057300--Sobic008G135000 Sobic001G057300--Sobic001G058900 Sobic001G057300--Sobic001G334300 Sobic001G057300--Sobic001G085400 Sobic006G035900 Sobic006G035900 Sobic001G057300--Sobic006G035900 Sobic001G057300--Sobic002G115000 Sobic001G057300--Sobic003G387900 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic008G108601 Sobic008G108601 Sobic002G049300--Sobic008G108601 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic009G144300--Sobic001G334300 Sobic009G144300--Sobic001G085400 Sobic009G227400 Sobic009G227400 Sobic009G144300--Sobic009G227400 Sobic009G144300--Sobic009G233400 Sobic009G144300--Sobic002G304900 Sobic009G144300--Sobic003G387900 Sobic009G144300--Sobic006G216600 Sobic009G144300--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G144300--Sobic002G255100 Sobic002G115000--Sobic001G085400 Sobic007G019000 Sobic007G019000 Sobic002G115000--Sobic007G019000 Sobic002G115000--Sobic001G058900 Sobic002G115000--Sobic002G304900 Sobic002G115000--Sobic002G047600 Sobic002G115000--Sobic003G249700 Sobic006G201500 Sobic006G201500 Sobic002G115000--Sobic006G201500 Sobic002G115000--Sobic007G178600 Sobic002G115000--Sobic002G049300 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic009G050300 Sobic009G050300 Sobic002G047600--Sobic009G050300 Sobic002G047600--Sobic008G108601 Sobic003G346600 Sobic003G346600 Sobic003G363800--Sobic003G346600 Sobic003G363800--Sobic006G137100 Sobic003G363800--Sobic007G178600 Sobic003G363800--Sobic002G047600 Sobic003G363800--Sobic003G387900 Sobic003G363800--Sobic009G076400 Sobic003G363800--Sobic001G085400 Sobic004G331400 Sobic004G331400 Sobic003G363800--Sobic004G331400 Sobic003G363800--Sobic006G216600
Octagon: transcription factors


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