Gene annotation
Transcriptome id Sobic.003G363800.2
Synonym Sb03g040550
Functional annotation L1P family of ribosomal proteins domain containing protein, expressed
UniProt A0A1W0W0J9
Pfam PF00687
Panther DB PTHR23105 PTHR23105:SF55
NCBI CDD KOG1570; 60S ribosomal protein L10A
KEGG Orthology K02865; RP-L10Ae, large subunit ribosomal protein L10Ae
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08360 : Ribosomal protein L1p/L10e family
RAP-DB (Rice) LOC_Os02g21660.1 : L1P family of ribosomal proteins domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026762
Brachypodium KQK10701
Barley HORVU3Hr1G084310.1 , HORVU3Hr1G084310.3 , HORVU3Hr1G084310.2 , HORVU3Hr1G084310.5 , HORVU3Hr1G084310.4 , HORVU3Hr1G084310.7 , HORVU3Hr1G084310.6
Wheat TraesCS3A02G372600 , TraesCS3A02G372600 , TraesCS3A02G372600 , TraesCS3B02G405000 , TraesCS3B02G405000 , TraesCS3D02G365600
Populus -


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cDNA sequences
Sobic.003G363800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
2 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
3 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
4 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
5 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
6 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
7 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
8 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
9 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
10 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
11 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
12 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
13 Sobic.001G444800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
14 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
15 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
16 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
17 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
18 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
19 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
20 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e


Gene co-expression network
sample Sobic003G363800 Sobic003G363800 Sobic003G346600 Sobic003G346600 Sobic003G363800--Sobic003G346600 Sobic006G137100 Sobic006G137100 Sobic003G363800--Sobic006G137100 Sobic007G178600 Sobic007G178600 Sobic003G363800--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic003G363800--Sobic002G047600 Sobic003G387900 Sobic003G387900 Sobic003G363800--Sobic003G387900 Sobic009G076400 Sobic009G076400 Sobic003G363800--Sobic009G076400 Sobic001G085400 Sobic001G085400 Sobic003G363800--Sobic001G085400 Sobic004G331400 Sobic004G331400 Sobic003G363800--Sobic004G331400 Sobic006G216600 Sobic006G216600 Sobic003G363800--Sobic006G216600 Sobic010G060500 Sobic010G060500 Sobic003G346600--Sobic010G060500 Sobic009G050300 Sobic009G050300 Sobic003G346600--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic003G346600--Sobic002G081600 Sobic009G166500 Sobic009G166500 Sobic003G346600--Sobic009G166500 Sobic004G008400 Sobic004G008400 Sobic003G346600--Sobic004G008400 Sobic009G163800 Sobic009G163800 Sobic003G346600--Sobic009G163800 Sobic003G346600--Sobic007G178600 Sobic006G116700 Sobic006G116700 Sobic003G346600--Sobic006G116700 Sobic003G346600--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic006G137100--Sobic003G346600 Sobic001G403500 Sobic001G403500 Sobic006G137100--Sobic001G403500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic006G137100--Sobic002G047600 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic002G047600--Sobic007G019400 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic002G047600--Sobic001G085400 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic002G047600--Sobic008G108601 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic003G387900--Sobic002G379500 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic010G069400 Sobic010G069400 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic009G076400--Sobic006G213000 Sobic009G076400--Sobic007G019400 Sobic009G076400--Sobic003G387900 Sobic007G053300 Sobic007G053300 Sobic009G076400--Sobic007G053300 Sobic009G076400--Sobic006G137100 Sobic001G226500 Sobic001G226500 Sobic009G076400--Sobic001G226500 Sobic002G255300 Sobic002G255300 Sobic009G076400--Sobic002G255300 Sobic009G076400--Sobic003G249700 Sobic009G076400--Sobic004G008400 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic002G304900 Sobic002G304900 Sobic001G085400--Sobic002G304900 Sobic002G049300 Sobic002G049300 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic002G175100 Sobic002G175100 Sobic004G331400--Sobic002G175100 Sobic001G376600 Sobic001G376600 Sobic004G331400--Sobic001G376600 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic003G408100 Sobic003G408100 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic004G331400--Sobic009G050300 Sobic004G331400--Sobic007G178600 Sobic001G091801 Sobic001G091801 Sobic004G331400--Sobic001G091801 Sobic006G216600--Sobic001G085400 Sobic006G216600--Sobic003G387900 Sobic006G216600--Sobic002G304900 Sobic001G057300 Sobic001G057300 Sobic006G216600--Sobic001G057300 Sobic006G216600--Sobic002G049300 Sobic009G144300 Sobic009G144300 Sobic006G216600--Sobic009G144300 Sobic006G216600--Sobic002G115000 Sobic006G216600--Sobic002G047600 Sobic006G216600--Sobic003G363800
Octagon: transcription factors


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