Gene annotation
Transcriptome id Sobic.001G444800.1
Synonym Sb01g041800
Functional annotation ubiquitin fusion protein, putative, expressed
UniProt -
Pfam PF11976 PF01020
Panther DB PTHR10666
NCBI CDD KOG0003; Ubiquitin/60s ribosomal protein L40 fusion
KEGG Orthology K02927; RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G36170 : Ubiquitin supergroup;Ribosomal protein L40e
RAP-DB (Rice) LOC_Os09g39500.1 : ubiquitin fusion protein, putative, expressed
MaizeGDB (Corn) Zm00025a042035 , Zm00025a001454 , Zm00025a001458 , Zm00025a037444 , Zm00025a036147 , Zm00025a039850 , Zm00025a047018 , Zm00025a013490
Brachypodium PNT60865 , KQJ91591 , KQK04218 , KQJ93465 , KQK04204 , PNT77709 , PNT77708 , KQJ90267 , KQK17095 , KQK22710 , KQK07353 , KQK16840 , KQJ93464 , KQK16153 , PNT65948
Barley HORVU6Hr1G026280.8 , HORVU6Hr1G026280.9 , HORVU6Hr1G026280.6 , HORVU6Hr1G026280.7 , HORVU6Hr1G026280.4 , HORVU6Hr1G026280.5 , HORVU6Hr1G026280.2 , HORVU6Hr1G026280.3 , HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU2Hr1G104410.8 , HORVU2Hr1G104410.9 , HORVU2Hr1G104410.1 , HORVU2Hr1G104410.2 , HORVU2Hr1G104410.3 , HORVU2Hr1G104410.4 , HORVU2Hr1G104410.5 , HORVU2Hr1G104410.6 , HORVU2Hr1G104410.7 , HORVU6Hr1G029050.4 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.2 , HORVU1Hr1G023660.3 , HORVU7Hr1G029070.1 , HORVU2Hr1G104440.3 , HORVU2Hr1G104440.2 , HORVU2Hr1G104440.1 , HORVU2Hr1G104440.7 , HORVU2Hr1G104440.6 , HORVU2Hr1G104440.5 , HORVU2Hr1G104440.4 , HORVU2Hr1G104410.12 , HORVU2Hr1G104410.13 , HORVU2Hr1G104410.10 , HORVU2Hr1G104410.11 , HORVU2Hr1G104410.16 , HORVU2Hr1G104410.17 , HORVU2Hr1G104410.14 , HORVU2Hr1G104410.15 , HORVU2Hr1G104410.18 , HORVU2Hr1G104410.19 , HORVU4Hr1G065100.2 , HORVU4Hr1G065100.3 , HORVU6Hr1G026260.18 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU7Hr1G103550.2 , HORVU7Hr1G103550.4 , HORVU3Hr1G014180.1 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.4 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.3 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU1Hr1G082070.1 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.4 , HORVU3Hr1G014150.5 , HORVU6Hr1G026260.8 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU6Hr1G026260.1 , HORVU6Hr1G026260.2 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU6Hr1G026200.19 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.15 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.13 , HORVU2Hr1G104410.23 , HORVU2Hr1G104410.22 , HORVU2Hr1G104410.21 , HORVU2Hr1G104410.20 , HORVU2Hr1G104410.26 , HORVU2Hr1G104410.25 , HORVU2Hr1G104410.24 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.6 , HORVU4Hr1G040980.1 , HORVU7Hr1G029100.1 , HORVU7Hr1G029100.2 , HORVU6Hr1G026280.14 , HORVU6Hr1G026280.15 , HORVU6Hr1G026280.16 , HORVU7Hr1G029150.1 , HORVU6Hr1G026280.10 , HORVU6Hr1G026280.11 , HORVU6Hr1G026280.12 , HORVU6Hr1G026280.13 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.16 , HORVU6Hr1G029050.2 , HORVU6Hr1G029050.3 , HORVU6Hr1G029050.1 , HORVU6Hr1G029050.7 , HORVU6Hr1G029050.5 , HORVU6Hr1G029050.8 , HORVU6Hr1G029050.9 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.4 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU6Hr1G026200.21 , HORVU6Hr1G026200.22 , HORVU4Hr1G061900.4 , HORVU4Hr1G061900.2 , HORVU4Hr1G061900.3 , HORVU4Hr1G061900.1 , HORVU7Hr1G109650.1 , HORVU7Hr1G109650.2 , HORVU7Hr1G029150.2 , HORVU7Hr1G029150.3 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11
Wheat TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCSU02G140400 , TraesCS2A02G408500 , TraesCS2D02G405500 , TraesCS2B02G426500 , TraesCS7B02G390900 , TraesCS2A02G458000 , TraesCS4B02G233100 , TraesCS4B02G233100 , TraesCS6A02G148100 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2D02G458600 , TraesCSU02G018500 , TraesCS4B02G390400 , TraesCS4A02G086400 , TraesCS4D02G218400 , TraesCS7D02G474200 , TraesCS4B02G218100 , TraesCS6B02G176000 , TraesCS4D02G218300 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS6D02G137400 , TraesCS6D02G136800 , TraesCS5D02G269800 , TraesCS6A02G147500 , TraesCS4D02G234300 , TraesCS4D02G234300 , TraesCS4A02G086300 , TraesCS2B02G480300 , TraesCS2B02G480400 , TraesCS6D02G125600 , TraesCS7B02G390800 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS2A02G408200 , TraesCS4B02G218000 , TraesCS5B02G260700 , TraesCS4A02G306500 , TraesCS7A02G487500
Populus PNT39174 , PNT39175 , PNT39172 , PNT39170 , PNT39171 , PNT11513 , PNT39173 , PNT28506 , PNT09093


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
2 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
3 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
4 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
5 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
6 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
7 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
8 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
9 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
10 Sobic.002G179300 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
11 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
12 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
13 Sobic.004G349700 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed K14563: NOP1, rRNA 2'-O-methyltransferase fibrillarin
14 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
15 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
16 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
17 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase
18 Sobic.003G219800 transferase family protein, putative, expressed -
19 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
20 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e


Gene co-expression network
sample Sobic001G444800 Sobic001G444800 Sobic003G363800 Sobic003G363800 Sobic001G444800--Sobic003G363800 Sobic001G085400 Sobic001G085400 Sobic001G444800--Sobic001G085400 Sobic009G076400 Sobic009G076400 Sobic001G444800--Sobic009G076400 Sobic003G249700 Sobic003G249700 Sobic001G444800--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G444800--Sobic003G387900 Sobic007G019400 Sobic007G019400 Sobic001G444800--Sobic007G019400 Sobic002G255300 Sobic002G255300 Sobic001G444800--Sobic002G255300 Sobic007G178600 Sobic007G178600 Sobic001G444800--Sobic007G178600 Sobic009G227400 Sobic009G227400 Sobic001G444800--Sobic009G227400 Sobic003G346600 Sobic003G346600 Sobic003G363800--Sobic003G346600 Sobic006G137100 Sobic006G137100 Sobic003G363800--Sobic006G137100 Sobic003G363800--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic003G363800--Sobic002G047600 Sobic003G363800--Sobic003G387900 Sobic003G363800--Sobic009G076400 Sobic003G363800--Sobic001G085400 Sobic004G331400 Sobic004G331400 Sobic003G363800--Sobic004G331400 Sobic006G216600 Sobic006G216600 Sobic003G363800--Sobic006G216600 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic002G304900 Sobic002G304900 Sobic001G085400--Sobic002G304900 Sobic002G049300 Sobic002G049300 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic006G213000 Sobic006G213000 Sobic009G076400--Sobic006G213000 Sobic009G076400--Sobic007G019400 Sobic009G076400--Sobic003G387900 Sobic007G053300 Sobic007G053300 Sobic009G076400--Sobic007G053300 Sobic009G076400--Sobic006G137100 Sobic001G226500 Sobic001G226500 Sobic009G076400--Sobic001G226500 Sobic009G076400--Sobic002G255300 Sobic009G076400--Sobic003G249700 Sobic004G008400 Sobic004G008400 Sobic009G076400--Sobic004G008400 Sobic003G249700--Sobic007G019400 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic003G387900--Sobic002G379500 Sobic003G387900--Sobic007G019400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic010G069400 Sobic010G069400 Sobic003G387900--Sobic010G069400 Sobic002G056200 Sobic002G056200 Sobic003G387900--Sobic002G056200 Sobic007G019400--Sobic003G249700 Sobic007G019400--Sobic009G076400 Sobic007G019400--Sobic002G047600 Sobic010G251600 Sobic010G251600 Sobic007G019400--Sobic010G251600 Sobic010G206200 Sobic010G206200 Sobic007G019400--Sobic010G206200 Sobic007G019400--Sobic006G213000 Sobic007G019400--Sobic003G387900 Sobic007G019400--Sobic002G056200 Sobic007G019400--Sobic001G226500 Sobic002G255300--Sobic004G008400 Sobic009G163800 Sobic009G163800 Sobic002G255300--Sobic009G163800 Sobic002G255300--Sobic003G346600 Sobic002G255300--Sobic009G076400 Sobic002G255300--Sobic007G178600 Sobic002G255300--Sobic004G331400 Sobic010G060500 Sobic010G060500 Sobic002G255300--Sobic010G060500 Sobic007G197800 Sobic007G197800 Sobic002G255300--Sobic007G197800 Sobic009G050300 Sobic009G050300 Sobic002G255300--Sobic009G050300 Sobic007G178600--Sobic004G008400 Sobic007G019000 Sobic007G019000 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic001G334300 Sobic001G334300 Sobic009G227400--Sobic001G334300 Sobic009G144300 Sobic009G144300 Sobic009G227400--Sobic009G144300 Sobic009G227400--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic009G227400--Sobic002G286900 Sobic009G227400--Sobic009G076400 Sobic009G227400--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G227400--Sobic002G255100 Sobic010G023900 Sobic010G023900 Sobic009G227400--Sobic010G023900 Sobic009G227400--Sobic003G387900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.