Gene annotation
Transcriptome id Sobic.001G334300.1,Sobic.001G334300.2
Synonym Sb01g032280
Functional annotation -
UniProt A0A1B6QMI3 , A0A1B6QMH5
Pfam PF01090
Panther DB PTHR11710
NCBI CDD KOG3411; 40S ribosomal protein S19
KEGG Orthology K02966; RP-S19e, small subunit ribosomal protein S19e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G02080 : Ribosomal protein S19e family protein
RAP-DB (Rice) LOC_Os03g31090.1 : 40S ribosomal protein S19, putative, expressed
MaizeGDB (Corn) Zm00025a052194 , Zm00025a002889
Brachypodium -
Barley HORVU6Hr1G062080.1 , HORVU5Hr1G052240.10 , HORVU5Hr1G052240.11 , HORVU5Hr1G052240.9 , HORVU6Hr1G064520.2 , HORVU6Hr1G064520.1 , HORVU2Hr1G019060.1 , HORVU5Hr1G052240.2 , HORVU5Hr1G052240.3 , HORVU5Hr1G052240.1 , HORVU5Hr1G052240.6 , HORVU5Hr1G052240.7 , HORVU5Hr1G052240.4 , HORVU5Hr1G052240.5 , HORVU5Hr1G052240.8 , HORVU5Hr1G031630.1 , HORVU1Hr1G061060.1
Wheat TraesCS5D02G174600 , TraesCS5A02G170200 , TraesCS5A02G170200 , TraesCS5B02G167000 , TraesCS5B02G167000
Populus -


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cDNA sequences
Sobic.001G334300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
2 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
3 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
4 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
5 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
6 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
7 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
8 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
9 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
10 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
11 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
12 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
13 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
14 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
15 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
16 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
17 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
18 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
19 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
20 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e


Gene co-expression network
sample Sobic001G334300 Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic001G334300--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic001G334300--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic001G334300--Sobic003G387900 Sobic009G144300 Sobic009G144300 Sobic001G334300--Sobic009G144300 Sobic001G085400 Sobic001G085400 Sobic001G334300--Sobic001G085400 Sobic009G179100 Sobic009G179100 Sobic001G334300--Sobic009G179100 Sobic009G227400 Sobic009G227400 Sobic001G334300--Sobic009G227400 Sobic005G050500 Sobic005G050500 Sobic001G334300--Sobic005G050500 Sobic002G049300 Sobic002G049300 Sobic001G334300--Sobic002G049300 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic009G233400--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic001G058900 Sobic001G058900 Sobic009G233400--Sobic001G058900 Sobic003G249700 Sobic003G249700 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic006G137100 Sobic006G137100 Sobic003G387900--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic003G387900--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic003G387900--Sobic002G379500 Sobic007G019400 Sobic007G019400 Sobic003G387900--Sobic007G019400 Sobic009G076400 Sobic009G076400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic003G387900--Sobic002G047600 Sobic003G387900--Sobic010G069400 Sobic002G056200 Sobic002G056200 Sobic003G387900--Sobic002G056200 Sobic009G144300--Sobic001G334300 Sobic009G144300--Sobic001G085400 Sobic009G144300--Sobic009G227400 Sobic009G144300--Sobic009G233400 Sobic009G144300--Sobic002G304900 Sobic009G144300--Sobic003G387900 Sobic006G216600 Sobic006G216600 Sobic009G144300--Sobic006G216600 Sobic009G144300--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G144300--Sobic002G255100 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic007G178600 Sobic007G178600 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic009G179100--Sobic002G304900 Sobic009G101700 Sobic009G101700 Sobic009G179100--Sobic009G101700 Sobic004G342400 Sobic004G342400 Sobic009G179100--Sobic004G342400 Sobic009G179100--Sobic001G334300 Sobic009G179100--Sobic005G050500 Sobic009G179100--Sobic009G233400 Sobic009G179100--Sobic003G387900 Sobic009G179100--Sobic001G039400 Sobic009G173500 Sobic009G173500 Sobic009G179100--Sobic009G173500 Sobic009G227400--Sobic001G334300 Sobic009G227400--Sobic009G144300 Sobic009G227400--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic009G227400--Sobic002G286900 Sobic009G227400--Sobic009G076400 Sobic009G227400--Sobic002G049300 Sobic009G227400--Sobic002G255100 Sobic010G023900 Sobic010G023900 Sobic009G227400--Sobic010G023900 Sobic009G227400--Sobic003G387900 Sobic005G050500--Sobic002G304900 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic005G050500--Sobic002G056200 Sobic005G050500--Sobic001G039400 Sobic005G050500--Sobic003G387900 Sobic005G050500--Sobic001G334300 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic008G108601 Sobic008G108601 Sobic002G049300--Sobic008G108601 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic002G049300--Sobic006G137100 Sobic002G049300--Sobic002G286900
Octagon: transcription factors


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