Gene annotation
Transcriptome id Sobic.009G179100.1
Synonym Sb09g023950
Functional annotation ribosomal protein L7Ae, putative, expressed
UniProt C5YZY2
Pfam PF01248
Panther DB PTHR11449 PTHR11449:SF3
NCBI CDD KOG2988; 60S ribosomal protein L30
KEGG Orthology K02908; RP-L30e, large subunit ribosomal protein L30e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G77940 : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
RAP-DB (Rice) LOC_Os05g41110.2 : ribosomal protein L7Ae, putative, expressed
MaizeGDB (Corn) Zm00025a044063
Brachypodium KQK16928 , KQK05672 , KQK16927
Barley HORVU7Hr1G110660.3 , HORVU7Hr1G110660.2 , HORVU7Hr1G110660.1 , HORVU7Hr1G110660.4 , HORVU1Hr1G068640.3 , HORVU1Hr1G068640.2 , HORVU1Hr1G068640.1 , HORVU0Hr1G023290.1
Wheat TraesCS1B02G318200 , TraesCS1A02G307400 , TraesCS7B02G399800 , TraesCS7D02G480000 , TraesCS7D02G480000 , TraesCS1D02G306800
Populus -


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cDNA sequences
Sobic.009G179100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
2 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
3 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
4 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
5 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
6 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
7 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
8 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
9 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
10 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
11 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
12 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
13 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
14 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
15 Sobic.007G029400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
16 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
17 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
18 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
19 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
20 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae


Gene co-expression network
sample Sobic009G179100 Sobic009G179100 Sobic002G304900 Sobic002G304900 Sobic009G179100--Sobic002G304900 Sobic009G101700 Sobic009G101700 Sobic009G179100--Sobic009G101700 Sobic004G342400 Sobic004G342400 Sobic009G179100--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic009G179100--Sobic001G334300 Sobic005G050500 Sobic005G050500 Sobic009G179100--Sobic005G050500 Sobic009G233400 Sobic009G233400 Sobic009G179100--Sobic009G233400 Sobic003G387900 Sobic003G387900 Sobic009G179100--Sobic003G387900 Sobic001G039400 Sobic001G039400 Sobic009G179100--Sobic001G039400 Sobic009G173500 Sobic009G173500 Sobic009G179100--Sobic009G173500 Sobic001G085400 Sobic001G085400 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic001G058900 Sobic001G058900 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic010G069400 Sobic010G069400 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic009G101700--Sobic009G179100 Sobic009G101700--Sobic005G050500 Sobic009G101700--Sobic001G334300 Sobic009G101700--Sobic003G387900 Sobic009G101700--Sobic004G342400 Sobic006G213000 Sobic006G213000 Sobic009G101700--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic009G101700--Sobic001G226500 Sobic009G242400 Sobic009G242400 Sobic009G101700--Sobic009G242400 Sobic002G379500 Sobic002G379500 Sobic009G101700--Sobic002G379500 Sobic010G023900 Sobic010G023900 Sobic004G342400--Sobic010G023900 Sobic004G342400--Sobic009G179100 Sobic004G342400--Sobic001G334300 Sobic009G144300 Sobic009G144300 Sobic004G342400--Sobic009G144300 Sobic004G342400--Sobic009G101700 Sobic004G342400--Sobic009G233400 Sobic004G342400--Sobic002G304900 Sobic004G342400--Sobic003G387900 Sobic004G342400--Sobic009G173500 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic001G334300--Sobic003G387900 Sobic001G334300--Sobic009G144300 Sobic001G334300--Sobic001G085400 Sobic001G334300--Sobic009G179100 Sobic009G227400 Sobic009G227400 Sobic001G334300--Sobic009G227400 Sobic001G334300--Sobic005G050500 Sobic002G049300 Sobic002G049300 Sobic001G334300--Sobic002G049300 Sobic005G050500--Sobic002G304900 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic002G056200 Sobic002G056200 Sobic005G050500--Sobic002G056200 Sobic005G050500--Sobic001G039400 Sobic005G050500--Sobic003G387900 Sobic005G050500--Sobic001G334300 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic009G233400--Sobic010G069400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic003G249700 Sobic003G249700 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic006G137100 Sobic006G137100 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic003G387900--Sobic002G379500 Sobic007G019400 Sobic007G019400 Sobic003G387900--Sobic007G019400 Sobic009G076400 Sobic009G076400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic003G387900--Sobic002G047600 Sobic003G387900--Sobic010G069400 Sobic003G387900--Sobic002G056200 Sobic001G039400--Sobic003G249700 Sobic001G039400--Sobic003G109600 Sobic001G039400--Sobic010G069400 Sobic001G039400--Sobic002G304900 Sobic001G039400--Sobic009G233400 Sobic001G039400--Sobic009G173500 Sobic001G039400--Sobic007G019400 Sobic001G039400--Sobic002G047600 Sobic001G039400--Sobic005G050500 Sobic009G173500--Sobic001G039400 Sobic009G173500--Sobic001G226500 Sobic009G173500--Sobic009G233400 Sobic009G223300 Sobic009G223300 Sobic009G173500--Sobic009G223300 Sobic009G173500--Sobic003G109600 Sobic003G078200 Sobic003G078200 Sobic009G173500--Sobic003G078200 Sobic009G173500--Sobic003G249700 Sobic009G173500--Sobic009G179100 Sobic010G070500 Sobic010G070500 Sobic009G173500--Sobic010G070500
Octagon: transcription factors


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