Gene annotation
Transcriptome id Sobic.007G029400.1
Synonym Sb07g002560
Functional annotation 60S acidic ribosomal protein P0, putative, expressed
UniProt C5YMX6
Pfam PF00428 PF00466
Panther DB PTHR21141 PTHR21141:SF3
NCBI CDD KOG0815; 60S acidic ribosomal protein P0
KEGG Orthology K02941; RP-LP0, large subunit ribosomal protein LP0
Gene Ontology GO:0005622; intracellular


Orthologs (automatic annotation)
TAIR AT2G40010 : Ribosomal protein L10 family protein
RAP-DB (Rice) LOC_Os08g03640.1 : 60S acidic ribosomal protein P0, putative, expressed
MaizeGDB (Corn) Zm00025a040397 , Zm00025a030170
Brachypodium KQJ83585 , KQJ94958 , PNT66996
Barley HORVU0Hr1G038820.3 , HORVU0Hr1G038820.2 , HORVU0Hr1G038820.1 , HORVU0Hr1G038820.5 , HORVU0Hr1G038820.4 , HORVU7Hr1G073720.8 , HORVU7Hr1G073720.9 , HORVU7Hr1G073720.2 , HORVU7Hr1G073720.3 , HORVU7Hr1G073720.1 , HORVU7Hr1G073720.6 , HORVU7Hr1G073720.7 , HORVU7Hr1G073720.4 , HORVU7Hr1G073720.5 , HORVU7Hr1G073720.10 , HORVU7Hr1G073720.11 , HORVU7Hr1G073720.12
Wheat TraesCS4D02G106300 , TraesCS7B02G209900 , TraesCS7B02G209900 , TraesCS7B02G218300 , TraesCS4B02G109200 , TraesCS7A02G309900 , TraesCS7D02G306600
Populus PNT17433 , PNT17435 , PNT17434


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cDNA sequences
Sobic.007G029400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
2 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
3 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
4 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
5 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
6 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
7 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
8 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
9 Sobic.004G349700 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed K14563: NOP1, rRNA 2'-O-methyltransferase fibrillarin
10 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
11 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
12 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
13 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
14 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
15 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
16 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
17 Sobic.009G212400 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
18 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
19 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
20 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e


Gene co-expression network
sample Sobic007G029400 Sobic007G029400 Sobic005G050500 Sobic005G050500 Sobic007G029400--Sobic005G050500 Sobic001G039400 Sobic001G039400 Sobic007G029400--Sobic001G039400 Sobic009G179100 Sobic009G179100 Sobic007G029400--Sobic009G179100 Sobic003G109600 Sobic003G109600 Sobic007G029400--Sobic003G109600 Sobic002G304900 Sobic002G304900 Sobic007G029400--Sobic002G304900 Sobic009G233400 Sobic009G233400 Sobic007G029400--Sobic009G233400 Sobic009G223300 Sobic009G223300 Sobic007G029400--Sobic009G223300 Sobic010G069400 Sobic010G069400 Sobic007G029400--Sobic010G069400 Sobic004G349700 Sobic004G349700 Sobic007G029400--Sobic004G349700 Sobic005G050500--Sobic002G304900 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic002G056200 Sobic002G056200 Sobic005G050500--Sobic002G056200 Sobic005G050500--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic005G050500--Sobic003G387900 Sobic001G334300 Sobic001G334300 Sobic005G050500--Sobic001G334300 Sobic005G050500--Sobic009G179100 Sobic005G050500--Sobic007G029400 Sobic003G249700 Sobic003G249700 Sobic001G039400--Sobic003G249700 Sobic001G039400--Sobic003G109600 Sobic001G039400--Sobic010G069400 Sobic001G039400--Sobic002G304900 Sobic001G039400--Sobic009G233400 Sobic009G173500 Sobic009G173500 Sobic001G039400--Sobic009G173500 Sobic007G019400 Sobic007G019400 Sobic001G039400--Sobic007G019400 Sobic002G047600 Sobic002G047600 Sobic001G039400--Sobic002G047600 Sobic001G039400--Sobic005G050500 Sobic009G179100--Sobic002G304900 Sobic009G101700 Sobic009G101700 Sobic009G179100--Sobic009G101700 Sobic004G342400 Sobic004G342400 Sobic009G179100--Sobic004G342400 Sobic009G179100--Sobic001G334300 Sobic009G179100--Sobic005G050500 Sobic009G179100--Sobic009G233400 Sobic009G179100--Sobic003G387900 Sobic009G179100--Sobic001G039400 Sobic009G179100--Sobic009G173500 Sobic002G379500 Sobic002G379500 Sobic003G109600--Sobic002G379500 Sobic003G109600--Sobic009G223300 Sobic001G403500 Sobic001G403500 Sobic003G109600--Sobic001G403500 Sobic003G109600--Sobic001G039400 Sobic003G109600--Sobic003G249700 Sobic003G109600--Sobic002G056200 Sobic003G109600--Sobic002G047600 Sobic003G109600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic003G109600--Sobic003G436700 Sobic001G085400 Sobic001G085400 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic001G058900 Sobic001G058900 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic009G233400--Sobic010G069400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic009G223300--Sobic003G109600 Sobic002G372400 Sobic002G372400 Sobic009G223300--Sobic002G372400 Sobic009G223300--Sobic002G379500 Sobic007G018300 Sobic007G018300 Sobic009G223300--Sobic007G018300 Sobic010G230700 Sobic010G230700 Sobic009G223300--Sobic010G230700 Sobic010G076400 Sobic010G076400 Sobic009G223300--Sobic010G076400 Sobic004G198400 Sobic004G198400 Sobic009G223300--Sobic004G198400 Sobic009G223300--Sobic009G233400 Sobic009G223300--Sobic001G039400 Sobic010G069400--Sobic003G387900 Sobic010G069400--Sobic009G233400 Sobic010G069400--Sobic001G039400 Sobic010G069400--Sobic005G050500 Sobic010G069400--Sobic002G304900 Sobic010G069400--Sobic002G047600 Sobic010G069400--Sobic004G349700 Sobic010G069400--Sobic002G056200 Sobic010G069400--Sobic001G085400 Sobic004G349700--Sobic010G069400 Sobic004G349700--Sobic001G039400 Sobic004G349700--Sobic003G387900 Sobic004G349700--Sobic001G085400 Sobic004G349700--Sobic002G047600 Sobic004G349700--Sobic002G304900 Sobic004G349700--Sobic009G233400 Sobic002G115000 Sobic002G115000 Sobic004G349700--Sobic002G115000 Sobic004G349700--Sobic007G019400
Octagon: transcription factors


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