Gene annotation
Transcriptome id Sobic.004G342400.1
Synonym Sb04g036970
Functional annotation ribosomal protein, putative, expressed
UniProt -
Pfam PF00238
Panther DB PTHR11761 PTHR11761:SF10
NCBI CDD KOG0901; 60S ribosomal protein L14/L17/L23
KEGG Orthology K02894; RP-L23e, large subunit ribosomal protein L23e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G33370 : Ribosomal protein L14p/L23e family protein
RAP-DB (Rice) LOC_Os02g56960.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a022586 , Zm00025a032819
Brachypodium KQK01320
Barley HORVU6Hr1G090170.1 , HORVU6Hr1G090170.3 , HORVU6Hr1G090170.2
Wheat TraesCS6A02G385700 , TraesCS6B02G424800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
2 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
3 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
4 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
5 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
6 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
7 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
8 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
9 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
10 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
11 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
12 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
13 Sobic.001G347901 - -
14 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
15 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
16 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
17 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
18 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
19 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
20 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e


Gene co-expression network
sample Sobic004G342400 Sobic004G342400 Sobic010G023900 Sobic010G023900 Sobic004G342400--Sobic010G023900 Sobic009G179100 Sobic009G179100 Sobic004G342400--Sobic009G179100 Sobic001G334300 Sobic001G334300 Sobic004G342400--Sobic001G334300 Sobic009G144300 Sobic009G144300 Sobic004G342400--Sobic009G144300 Sobic009G101700 Sobic009G101700 Sobic004G342400--Sobic009G101700 Sobic009G233400 Sobic009G233400 Sobic004G342400--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic004G342400--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic004G342400--Sobic003G387900 Sobic009G173500 Sobic009G173500 Sobic004G342400--Sobic009G173500 Sobic010G023900--Sobic004G342400 Sobic010G023900--Sobic001G334300 Sobic009G227400 Sobic009G227400 Sobic010G023900--Sobic009G227400 Sobic002G286900 Sobic002G286900 Sobic010G023900--Sobic002G286900 Sobic010G023900--Sobic003G387900 Sobic010G023900--Sobic009G179100 Sobic010G023900--Sobic009G233400 Sobic006G213000 Sobic006G213000 Sobic010G023900--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic010G023900--Sobic001G226500 Sobic009G179100--Sobic002G304900 Sobic009G179100--Sobic009G101700 Sobic009G179100--Sobic004G342400 Sobic009G179100--Sobic001G334300 Sobic005G050500 Sobic005G050500 Sobic009G179100--Sobic005G050500 Sobic009G179100--Sobic009G233400 Sobic009G179100--Sobic003G387900 Sobic001G039400 Sobic001G039400 Sobic009G179100--Sobic001G039400 Sobic009G179100--Sobic009G173500 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic001G334300--Sobic003G387900 Sobic001G334300--Sobic009G144300 Sobic001G085400 Sobic001G085400 Sobic001G334300--Sobic001G085400 Sobic001G334300--Sobic009G179100 Sobic001G334300--Sobic009G227400 Sobic001G334300--Sobic005G050500 Sobic002G049300 Sobic002G049300 Sobic001G334300--Sobic002G049300 Sobic009G144300--Sobic001G334300 Sobic009G144300--Sobic001G085400 Sobic009G144300--Sobic009G227400 Sobic009G144300--Sobic009G233400 Sobic009G144300--Sobic002G304900 Sobic009G144300--Sobic003G387900 Sobic006G216600 Sobic006G216600 Sobic009G144300--Sobic006G216600 Sobic009G144300--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G144300--Sobic002G255100 Sobic009G101700--Sobic009G179100 Sobic009G101700--Sobic005G050500 Sobic009G101700--Sobic001G334300 Sobic009G101700--Sobic003G387900 Sobic009G101700--Sobic004G342400 Sobic009G101700--Sobic006G213000 Sobic009G101700--Sobic001G226500 Sobic009G242400 Sobic009G242400 Sobic009G101700--Sobic009G242400 Sobic002G379500 Sobic002G379500 Sobic009G101700--Sobic002G379500 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic009G233400--Sobic010G069400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic001G058900 Sobic001G058900 Sobic009G233400--Sobic001G058900 Sobic003G249700 Sobic003G249700 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic006G137100 Sobic006G137100 Sobic003G387900--Sobic006G137100 Sobic003G387900--Sobic006G213000 Sobic003G387900--Sobic002G379500 Sobic007G019400 Sobic007G019400 Sobic003G387900--Sobic007G019400 Sobic009G076400 Sobic009G076400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic003G387900--Sobic002G047600 Sobic003G387900--Sobic010G069400 Sobic002G056200 Sobic002G056200 Sobic003G387900--Sobic002G056200 Sobic009G173500--Sobic001G039400 Sobic009G173500--Sobic001G226500 Sobic009G173500--Sobic009G233400 Sobic009G223300 Sobic009G223300 Sobic009G173500--Sobic009G223300 Sobic009G173500--Sobic003G109600 Sobic003G078200 Sobic003G078200 Sobic009G173500--Sobic003G078200 Sobic009G173500--Sobic003G249700 Sobic009G173500--Sobic009G179100 Sobic010G070500 Sobic010G070500 Sobic009G173500--Sobic010G070500
Octagon: transcription factors


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