Gene annotation
Transcriptome id Sobic.006G231700.1
Synonym Sb06g029950
Functional annotation LSM domain containing protein, expressed
UniProt C5YGR1
Pfam PF01423
Panther DB PTHR10553
NCBI CDD KOG1781; Small Nuclear ribonucleoprotein splicing factor
KEGG Orthology K12626; U6 snRNA-associated Sm-like protein LSm7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G03870 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os08g08040.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a057143
Brachypodium KQJ84838
Barley -
Wheat TraesCS2D02G531700 , TraesCS2B02G559200 , TraesCS1D02G062600 , TraesCS2A02G528800
Populus -


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cDNA sequences
Sobic.006G231700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
2 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
3 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
4 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
5 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
6 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
7 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
8 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
9 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
10 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
11 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
12 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
13 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
14 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
15 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
16 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
17 Sobic.010G267900 expressed protein -
18 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
19 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
20 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9


Gene co-expression network
sample Sobic006G231700 Sobic006G231700 Sobic005G111100 Sobic005G111100 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G013900 Sobic006G013900 Sobic006G231700--Sobic006G013900 Sobic003G358300 Sobic003G358300 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900 Sobic005G111100--Sobic001G128400 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic005G111100--Sobic006G231700 Sobic002G218000 Sobic002G218000 Sobic005G111100--Sobic002G218000 Sobic007G163700--Sobic006G231700 Sobic007G163700--Sobic001G517600 Sobic005G157200 Sobic005G157200 Sobic007G163700--Sobic005G157200 Sobic010G267900 Sobic010G267900 Sobic007G163700--Sobic010G267900 Sobic001G529000 Sobic001G529000 Sobic007G163700--Sobic001G529000 Sobic007G163700--Sobic001G128400 Sobic003G362400 Sobic003G362400 Sobic007G163700--Sobic003G362400 Sobic002G373800 Sobic002G373800 Sobic007G163700--Sobic002G373800 Sobic003G018600 Sobic003G018600 Sobic007G163700--Sobic003G018600 Sobic001G094500--Sobic006G231700 Sobic001G094500--Sobic001G128400 Sobic001G094500--Sobic005G111100 Sobic004G265700 Sobic004G265700 Sobic001G094500--Sobic004G265700 Sobic002G279000 Sobic002G279000 Sobic001G094500--Sobic002G279000 Sobic001G532100 Sobic001G532100 Sobic001G094500--Sobic001G532100 Sobic001G094500--Sobic007G152400 Sobic001G094500--Sobic001G529000 Sobic001G094500--Sobic007G163700 Sobic006G013900--Sobic006G231700 Sobic002G051200 Sobic002G051200 Sobic006G013900--Sobic002G051200 Sobic001G162800 Sobic001G162800 Sobic006G013900--Sobic001G162800 Sobic006G013900--Sobic004G137900 Sobic001G154400 Sobic001G154400 Sobic006G013900--Sobic001G154400 Sobic004G343600 Sobic004G343600 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic002G386300 Sobic002G386300 Sobic006G013900--Sobic002G386300 Sobic001G066700 Sobic001G066700 Sobic003G358300--Sobic001G066700 Sobic003G358300--Sobic006G231700 Sobic003G358300--Sobic005G111100 Sobic002G044000 Sobic002G044000 Sobic003G358300--Sobic002G044000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic003G358300--Sobic002G386300 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic001G128400--Sobic005G111100 Sobic001G128400--Sobic003G129800 Sobic010G204500 Sobic010G204500 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic001G128400--Sobic010G054200 Sobic001G128400--Sobic003G280700 Sobic003G109600 Sobic003G109600 Sobic001G128400--Sobic003G109600 Sobic003G129800--Sobic001G128400 Sobic003G129800--Sobic005G111100 Sobic002G304900 Sobic002G304900 Sobic003G129800--Sobic002G304900 Sobic003G129800--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic003G129800--Sobic001G058900 Sobic001G513500 Sobic001G513500 Sobic003G129800--Sobic001G513500 Sobic009G223300 Sobic009G223300 Sobic003G129800--Sobic009G223300 Sobic003G129800--Sobic004G066800 Sobic005G050500 Sobic005G050500 Sobic003G129800--Sobic005G050500 Sobic001G436200 Sobic001G436200 Sobic001G517600--Sobic001G436200 Sobic001G517600--Sobic002G373800 Sobic001G517600--Sobic003G109600 Sobic001G517600--Sobic004G032000 Sobic002G406500 Sobic002G406500 Sobic001G517600--Sobic002G406500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic008G098800 Sobic008G098800 Sobic001G517600--Sobic008G098800 Sobic006G138100 Sobic006G138100 Sobic001G517600--Sobic006G138100 Sobic004G012800 Sobic004G012800 Sobic004G137900--Sobic004G012800 Sobic004G137900--Sobic006G231700 Sobic004G137900--Sobic003G358300 Sobic004G137900--Sobic006G013900 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic009G120100 Sobic009G120100 Sobic004G137900--Sobic009G120100 Sobic004G137900--Sobic003G129800 Sobic004G137900--Sobic005G111100
Octagon: transcription factors


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