Gene annotation
Transcriptome id Sobic.006G013900.1
Synonym Sb06g001360, NRPE11, NRPB11, ATRPB13.6, NRPD11
Functional annotation RNA polymerase subunit, putative, expressed
UniProt C5YC44
Pfam PF13656
Panther DB PTHR13946 PTHR13946:SF16
NCBI CDD KOG4392; RNA polymerase, subunit L
KEGG Orthology K03008; RPB11, DNA-directed RNA polymerase II subunit RPB11
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52090 : DNA-directed RNA polymerase, RBP11-like
RAP-DB (Rice) LOC_Os07g07610.1 : RNA polymerase subunit, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT76846 , KQK20436 , KQK20437 , KQK20434 , KQK20435
Barley -
Wheat TraesCS1B02G133100
Populus -


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cDNA sequences
Sobic.006G013900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
2 Sobic.002G051200 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
3 Sobic.001G162800 expressed protein -
4 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
5 Sobic.001G154400 expp1 protein precursor, putative, expressed -
6 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
7 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
8 Sobic.005G206700 WD domain, G-beta repeat domain containing protein, expressed K12602: WDR61, REC14, WD repeat-containing protein 61
9 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3
10 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
11 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
12 Sobic.006G108600 prohibitin, putative, expressed K17080: prohibitin 1
13 Sobic.009G165500 Lung seven transmembrane receptor domain containing protein, putative, expressed -
14 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
15 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
16 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
17 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
18 Sobic.001G347901 - -
19 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
20 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A


Gene co-expression network
sample Sobic006G013900 Sobic006G013900 Sobic006G231700 Sobic006G231700 Sobic006G013900--Sobic006G231700 Sobic002G051200 Sobic002G051200 Sobic006G013900--Sobic002G051200 Sobic001G162800 Sobic001G162800 Sobic006G013900--Sobic001G162800 Sobic004G137900 Sobic004G137900 Sobic006G013900--Sobic004G137900 Sobic001G154400 Sobic001G154400 Sobic006G013900--Sobic001G154400 Sobic004G343600 Sobic004G343600 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic002G386300 Sobic002G386300 Sobic006G013900--Sobic002G386300 Sobic005G111100 Sobic005G111100 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G231700--Sobic006G013900 Sobic003G358300 Sobic003G358300 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic006G231700--Sobic004G137900 Sobic002G051200--Sobic006G013900 Sobic002G051200--Sobic006G231700 Sobic010G256200 Sobic010G256200 Sobic002G051200--Sobic010G256200 Sobic002G051200--Sobic001G154400 Sobic001G349400 Sobic001G349400 Sobic002G051200--Sobic001G349400 Sobic002G051200--Sobic003G358300 Sobic003G434000 Sobic003G434000 Sobic002G051200--Sobic003G434000 Sobic002G051200--Sobic004G137900 Sobic009G052500 Sobic009G052500 Sobic002G051200--Sobic009G052500 Sobic001G347901 Sobic001G347901 Sobic001G162800--Sobic001G347901 Sobic009G233400 Sobic009G233400 Sobic001G162800--Sobic009G233400 Sobic006G108600 Sobic006G108600 Sobic001G162800--Sobic006G108600 Sobic001G162800--Sobic006G013900 Sobic002G054000 Sobic002G054000 Sobic001G162800--Sobic002G054000 Sobic009G173500 Sobic009G173500 Sobic001G162800--Sobic009G173500 Sobic008G135000 Sobic008G135000 Sobic001G162800--Sobic008G135000 Sobic010G076400 Sobic010G076400 Sobic001G162800--Sobic010G076400 Sobic004G342400 Sobic004G342400 Sobic001G162800--Sobic004G342400 Sobic004G012800 Sobic004G012800 Sobic004G137900--Sobic004G012800 Sobic004G137900--Sobic006G231700 Sobic004G137900--Sobic003G358300 Sobic004G137900--Sobic006G013900 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic009G120100 Sobic009G120100 Sobic004G137900--Sobic009G120100 Sobic004G137900--Sobic003G129800 Sobic004G137900--Sobic005G111100 Sobic002G113500 Sobic002G113500 Sobic001G154400--Sobic002G113500 Sobic001G154400--Sobic006G013900 Sobic001G336050 Sobic001G336050 Sobic001G154400--Sobic001G336050 Sobic004G102900 Sobic004G102900 Sobic001G154400--Sobic004G102900 Sobic004G318400 Sobic004G318400 Sobic001G154400--Sobic004G318400 Sobic001G154400--Sobic002G051200 Sobic004G063500 Sobic004G063500 Sobic001G154400--Sobic004G063500 Sobic001G154400--Sobic010G256200 Sobic003G325700 Sobic003G325700 Sobic001G154400--Sobic003G325700 Sobic001G107300 Sobic001G107300 Sobic004G343600--Sobic001G107300 Sobic004G343600--Sobic002G386300 Sobic004G343600--Sobic006G013900 Sobic010G032700 Sobic010G032700 Sobic004G343600--Sobic010G032700 Sobic004G036800 Sobic004G036800 Sobic004G343600--Sobic004G036800 Sobic001G436300 Sobic001G436300 Sobic004G343600--Sobic001G436300 Sobic006G127500 Sobic006G127500 Sobic004G343600--Sobic006G127500 Sobic001G412500 Sobic001G412500 Sobic004G343600--Sobic001G412500 Sobic002G184900 Sobic002G184900 Sobic004G343600--Sobic002G184900 Sobic006G115000 Sobic006G115000 Sobic002G331300--Sobic006G115000 Sobic005G050500 Sobic005G050500 Sobic002G331300--Sobic005G050500 Sobic002G331300--Sobic003G129800 Sobic009G179100 Sobic009G179100 Sobic002G331300--Sobic009G179100 Sobic002G331300--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic002G331300--Sobic001G334300 Sobic002G331300--Sobic009G233400 Sobic009G227400 Sobic009G227400 Sobic002G331300--Sobic009G227400 Sobic010G023900 Sobic010G023900 Sobic002G331300--Sobic010G023900 Sobic005G206700--Sobic006G231700 Sobic005G206700--Sobic006G013900 Sobic005G206700--Sobic004G137900 Sobic010G054200 Sobic010G054200 Sobic005G206700--Sobic010G054200 Sobic005G206700--Sobic004G063500 Sobic001G233800 Sobic001G233800 Sobic005G206700--Sobic001G233800 Sobic007G152400 Sobic007G152400 Sobic005G206700--Sobic007G152400 Sobic005G206700--Sobic009G120100 Sobic005G206700--Sobic002G331300 Sobic002G386300--Sobic001G517600 Sobic002G386300--Sobic003G358300 Sobic002G386300--Sobic006G231700 Sobic010G100000 Sobic010G100000 Sobic002G386300--Sobic010G100000 Sobic002G044000 Sobic002G044000 Sobic002G386300--Sobic002G044000 Sobic009G191200 Sobic009G191200 Sobic002G386300--Sobic009G191200 Sobic003G280700 Sobic003G280700 Sobic002G386300--Sobic003G280700 Sobic006G226500 Sobic006G226500 Sobic002G386300--Sobic006G226500 Sobic002G386300--Sobic004G343600
Octagon: transcription factors


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