Gene annotation
Transcriptome id Sobic.002G386300.1
Synonym Sb02g040250
Functional annotation exosome complex exonuclease, putative, expressed
UniProt C5X376
Pfam PF03725 PF01138
Panther DB PTHR11953 PTHR11953:SF2
NCBI CDD KOG1068; Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases
KEGG Orthology K12587; MTR3, exosome complex component MTR3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27490 : 3\'-5\'-exoribonuclease family protein
RAP-DB (Rice) LOC_Os03g62720.1 : exosome complex exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a048862
Brachypodium KQK15071
Barley -
Wheat TraesCS2B02G181700 , TraesCS2D02G162000 , TraesCS2A02G156200
Populus -


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cDNA sequences
Sobic.002G386300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
2 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
3 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
4 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
5 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
6 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
7 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
8 Sobic.006G226500 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
9 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
10 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
11 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
12 Sobic.006G108600 prohibitin, putative, expressed K17080: prohibitin 1
13 Sobic.009G114400 expressed protein K14839: nucleolar protein 16
14 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
15 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
16 Sobic.006G143500 expressed protein -
17 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
18 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
19 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
20 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20


Gene co-expression network
sample Sobic002G386300 Sobic002G386300 Sobic001G517600 Sobic001G517600 Sobic002G386300--Sobic001G517600 Sobic003G358300 Sobic003G358300 Sobic002G386300--Sobic003G358300 Sobic006G231700 Sobic006G231700 Sobic002G386300--Sobic006G231700 Sobic010G100000 Sobic010G100000 Sobic002G386300--Sobic010G100000 Sobic002G044000 Sobic002G044000 Sobic002G386300--Sobic002G044000 Sobic009G191200 Sobic009G191200 Sobic002G386300--Sobic009G191200 Sobic003G280700 Sobic003G280700 Sobic002G386300--Sobic003G280700 Sobic006G226500 Sobic006G226500 Sobic002G386300--Sobic006G226500 Sobic004G343600 Sobic004G343600 Sobic002G386300--Sobic004G343600 Sobic001G436200 Sobic001G436200 Sobic001G517600--Sobic001G436200 Sobic002G373800 Sobic002G373800 Sobic001G517600--Sobic002G373800 Sobic003G109600 Sobic003G109600 Sobic001G517600--Sobic003G109600 Sobic004G032000 Sobic004G032000 Sobic001G517600--Sobic004G032000 Sobic002G406500 Sobic002G406500 Sobic001G517600--Sobic002G406500 Sobic005G050500 Sobic005G050500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic008G098800 Sobic008G098800 Sobic001G517600--Sobic008G098800 Sobic006G138100 Sobic006G138100 Sobic001G517600--Sobic006G138100 Sobic001G066700 Sobic001G066700 Sobic003G358300--Sobic001G066700 Sobic003G358300--Sobic006G231700 Sobic005G111100 Sobic005G111100 Sobic003G358300--Sobic005G111100 Sobic003G358300--Sobic002G044000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic003G358300--Sobic009G191200 Sobic006G231700--Sobic005G111100 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G013900 Sobic006G013900 Sobic006G231700--Sobic006G013900 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900 Sobic001G513500 Sobic001G513500 Sobic010G100000--Sobic001G513500 Sobic001G011200 Sobic001G011200 Sobic010G100000--Sobic001G011200 Sobic010G100000--Sobic005G050500 Sobic010G100000--Sobic001G436200 Sobic010G100000--Sobic003G280700 Sobic001G481700 Sobic001G481700 Sobic010G100000--Sobic001G481700 Sobic005G091700 Sobic005G091700 Sobic010G100000--Sobic005G091700 Sobic001G018800 Sobic001G018800 Sobic010G100000--Sobic001G018800 Sobic010G100000--Sobic002G406500 Sobic009G201800 Sobic009G201800 Sobic002G044000--Sobic009G201800 Sobic002G044000--Sobic003G358300 Sobic009G070200 Sobic009G070200 Sobic002G044000--Sobic009G070200 Sobic001G285300 Sobic001G285300 Sobic002G044000--Sobic001G285300 Sobic006G143500 Sobic006G143500 Sobic002G044000--Sobic006G143500 Sobic002G044000--Sobic004G032000 Sobic001G126200 Sobic001G126200 Sobic002G044000--Sobic001G126200 Sobic007G152400 Sobic007G152400 Sobic002G044000--Sobic007G152400 Sobic002G044000--Sobic002G386300 Sobic009G233400 Sobic009G233400 Sobic009G191200--Sobic009G233400 Sobic008G135000 Sobic008G135000 Sobic009G191200--Sobic008G135000 Sobic001G334300 Sobic001G334300 Sobic009G191200--Sobic001G334300 Sobic001G058900 Sobic001G058900 Sobic009G191200--Sobic001G058900 Sobic002G115000 Sobic002G115000 Sobic009G191200--Sobic002G115000 Sobic002G049300 Sobic002G049300 Sobic009G191200--Sobic002G049300 Sobic009G191200--Sobic003G280700 Sobic001G085400 Sobic001G085400 Sobic009G191200--Sobic001G085400 Sobic002G304900 Sobic002G304900 Sobic009G191200--Sobic002G304900 Sobic003G280700--Sobic002G049300 Sobic003G280700--Sobic001G011200 Sobic006G081100 Sobic006G081100 Sobic003G280700--Sobic006G081100 Sobic003G280700--Sobic005G050500 Sobic003G280700--Sobic001G085400 Sobic004G198400 Sobic004G198400 Sobic003G280700--Sobic004G198400 Sobic002G056200 Sobic002G056200 Sobic003G280700--Sobic002G056200 Sobic009G022400 Sobic009G022400 Sobic003G280700--Sobic009G022400 Sobic001G403500 Sobic001G403500 Sobic003G280700--Sobic001G403500 Sobic006G226500--Sobic010G100000 Sobic001G505500 Sobic001G505500 Sobic006G226500--Sobic001G505500 Sobic006G226500--Sobic001G018800 Sobic006G226500--Sobic003G280700 Sobic002G331300 Sobic002G331300 Sobic006G226500--Sobic002G331300 Sobic009G144300 Sobic009G144300 Sobic006G226500--Sobic009G144300 Sobic006G226500--Sobic005G050500 Sobic006G226500--Sobic001G334300 Sobic006G226500--Sobic005G091700 Sobic001G107300 Sobic001G107300 Sobic004G343600--Sobic001G107300 Sobic004G343600--Sobic002G386300 Sobic004G343600--Sobic006G013900 Sobic010G032700 Sobic010G032700 Sobic004G343600--Sobic010G032700 Sobic004G036800 Sobic004G036800 Sobic004G343600--Sobic004G036800 Sobic001G436300 Sobic001G436300 Sobic004G343600--Sobic001G436300 Sobic006G127500 Sobic006G127500 Sobic004G343600--Sobic006G127500 Sobic001G412500 Sobic001G412500 Sobic004G343600--Sobic001G412500 Sobic002G184900 Sobic002G184900 Sobic004G343600--Sobic002G184900
Octagon: transcription factors


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