Gene annotation
Transcriptome id Sobic.004G343600.2,Sobic.004G343600.1
Synonym Sb04g037080
Functional annotation 3-5 exoribonuclease CSL4, putative, expressed
UniProt C5XVV2 , A0A194YT40
Pfam PF14382 PF10447
Panther DB PTHR12686 PTHR12686:SF8
NCBI CDD KOG3409; Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4)
KEGG Orthology K07573; CSL4, exosome complex component CSL4
Gene Ontology GO:0003723; RNA binding GO:0000178exosome (RNase complex)


Orthologs (automatic annotation)
TAIR AT5G38890 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os02g57070.1 : 3-5 exoribonuclease CSL4, putative, expressed
MaizeGDB (Corn) Zm00025a022593
Brachypodium KQJ91418
Barley HORVU5Hr1G088210.8 , HORVU5Hr1G088210.9 , HORVU5Hr1G088210.2 , HORVU5Hr1G088210.3 , HORVU5Hr1G088210.1 , HORVU5Hr1G088210.6 , HORVU5Hr1G088210.7 , HORVU5Hr1G088210.4 , HORVU5Hr1G088210.5 , HORVU5Hr1G088210.10 , HORVU5Hr1G088210.11 , HORVU5Hr1G088210.12 , HORVU5Hr1G088210.13 , HORVU5Hr1G088210.14 , HORVU5Hr1G088210.16
Wheat TraesCS5B02G359100 , TraesCS5D02G365400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
2 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3
3 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
4 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
5 Sobic.004G036800 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
6 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
7 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
8 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
9 Sobic.002G184900 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
10 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
11 Sobic.001G162800 expressed protein -
12 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
13 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
14 Sobic.010G256200 expressed protein -
15 Sobic.002G051200 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
16 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
17 Sobic.004G010700 expressed protein -
18 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
19 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
20 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7


Gene co-expression network
sample Sobic004G343600 Sobic004G343600 Sobic001G107300 Sobic001G107300 Sobic004G343600--Sobic001G107300 Sobic002G386300 Sobic002G386300 Sobic004G343600--Sobic002G386300 Sobic006G013900 Sobic006G013900 Sobic004G343600--Sobic006G013900 Sobic010G032700 Sobic010G032700 Sobic004G343600--Sobic010G032700 Sobic004G036800 Sobic004G036800 Sobic004G343600--Sobic004G036800 Sobic001G436300 Sobic001G436300 Sobic004G343600--Sobic001G436300 Sobic006G127500 Sobic006G127500 Sobic004G343600--Sobic006G127500 Sobic001G412500 Sobic001G412500 Sobic004G343600--Sobic001G412500 Sobic002G184900 Sobic002G184900 Sobic004G343600--Sobic002G184900 Sobic001G107300--Sobic004G343600 Sobic001G505000 Sobic001G505000 Sobic001G107300--Sobic001G505000 Sobic004G047500 Sobic004G047500 Sobic001G107300--Sobic004G047500 Sobic002G353500 Sobic002G353500 Sobic001G107300--Sobic002G353500 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G107300--Sobic001G436300 Sobic001G517600 Sobic001G517600 Sobic002G386300--Sobic001G517600 Sobic003G358300 Sobic003G358300 Sobic002G386300--Sobic003G358300 Sobic006G231700 Sobic006G231700 Sobic002G386300--Sobic006G231700 Sobic010G100000 Sobic010G100000 Sobic002G386300--Sobic010G100000 Sobic002G044000 Sobic002G044000 Sobic002G386300--Sobic002G044000 Sobic009G191200 Sobic009G191200 Sobic002G386300--Sobic009G191200 Sobic003G280700 Sobic003G280700 Sobic002G386300--Sobic003G280700 Sobic006G226500 Sobic006G226500 Sobic002G386300--Sobic006G226500 Sobic002G386300--Sobic004G343600 Sobic006G013900--Sobic006G231700 Sobic002G051200 Sobic002G051200 Sobic006G013900--Sobic002G051200 Sobic006G013900--Sobic001G162800 Sobic004G137900 Sobic004G137900 Sobic006G013900--Sobic004G137900 Sobic001G154400 Sobic001G154400 Sobic006G013900--Sobic001G154400 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic006G013900--Sobic002G386300 Sobic001G371100 Sobic001G371100 Sobic010G032700--Sobic001G371100 Sobic009G119700 Sobic009G119700 Sobic010G032700--Sobic009G119700 Sobic002G280700 Sobic002G280700 Sobic010G032700--Sobic002G280700 Sobic009G088200 Sobic009G088200 Sobic010G032700--Sobic009G088200 Sobic010G032700--Sobic004G343600 Sobic002G054000 Sobic002G054000 Sobic010G032700--Sobic002G054000 Sobic002G319200 Sobic002G319200 Sobic010G032700--Sobic002G319200 Sobic002G045100 Sobic002G045100 Sobic010G032700--Sobic002G045100 Sobic001G228200 Sobic001G228200 Sobic010G032700--Sobic001G228200 Sobic004G036800--Sobic004G343600 Sobic001G468500 Sobic001G468500 Sobic004G036800--Sobic001G468500 Sobic006G133700 Sobic006G133700 Sobic004G036800--Sobic006G133700 Sobic004G036800--Sobic001G412500 Sobic007G129000 Sobic007G129000 Sobic004G036800--Sobic007G129000 Sobic010G256200 Sobic010G256200 Sobic004G036800--Sobic010G256200 Sobic001G369800 Sobic001G369800 Sobic004G036800--Sobic001G369800 Sobic001G040300 Sobic001G040300 Sobic004G036800--Sobic001G040300 Sobic010G265900 Sobic010G265900 Sobic004G036800--Sobic010G265900 Sobic001G436300--Sobic006G127500 Sobic001G235700 Sobic001G235700 Sobic001G436300--Sobic001G235700 Sobic001G115500 Sobic001G115500 Sobic001G436300--Sobic001G115500 Sobic003G274400 Sobic003G274400 Sobic001G436300--Sobic003G274400 Sobic001G008500 Sobic001G008500 Sobic001G436300--Sobic001G008500 Sobic006G245700 Sobic006G245700 Sobic001G436300--Sobic006G245700 Sobic001G436300--Sobic004G343600 Sobic002G317600 Sobic002G317600 Sobic001G436300--Sobic002G317600 Sobic001G097400 Sobic001G097400 Sobic001G436300--Sobic001G097400 Sobic006G127500--Sobic001G436300 Sobic001G157600 Sobic001G157600 Sobic006G127500--Sobic001G157600 Sobic006G251600 Sobic006G251600 Sobic006G127500--Sobic006G251600 Sobic003G028400 Sobic003G028400 Sobic006G127500--Sobic003G028400 Sobic003G098200 Sobic003G098200 Sobic006G127500--Sobic003G098200 Sobic006G127500--Sobic004G343600 Sobic006G127500--Sobic001G097400 Sobic006G127500--Sobic001G235700 Sobic006G127500--Sobic001G107300 Sobic009G165500 Sobic009G165500 Sobic001G412500--Sobic009G165500 Sobic003G084300 Sobic003G084300 Sobic001G412500--Sobic003G084300 Sobic001G412500--Sobic004G343600 Sobic001G412500--Sobic006G013900 Sobic004G208100 Sobic004G208100 Sobic001G412500--Sobic004G208100 Sobic001G412500--Sobic001G107300 Sobic001G150033 Sobic001G150033 Sobic001G412500--Sobic001G150033 Sobic001G261549 Sobic001G261549 Sobic001G412500--Sobic001G261549 Sobic001G528600 Sobic001G528600 Sobic001G412500--Sobic001G528600 Sobic001G402600 Sobic001G402600 Sobic002G184900--Sobic001G402600 Sobic002G184900--Sobic002G386300 Sobic009G201800 Sobic009G201800 Sobic002G184900--Sobic009G201800 Sobic002G184900--Sobic004G343600 Sobic002G184900--Sobic003G358300 Sobic004G010700 Sobic004G010700 Sobic002G184900--Sobic004G010700 Sobic006G143500 Sobic006G143500 Sobic002G184900--Sobic006G143500 Sobic002G184900--Sobic002G044000 Sobic003G031200 Sobic003G031200 Sobic002G184900--Sobic003G031200
Octagon: transcription factors


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