Gene annotation
Transcriptome id Sobic.006G127500.2,Sobic.006G127500.1
Synonym Sb06g020760, NRPD5, NRPB5, RPB5A, ATRPABC24.3
Functional annotation DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
UniProt B3VTB9 , A0A1B6PLP7 , A0A1B6PLQ2
Pfam PF03871 PF01191 PF01191 PF03871
Panther DB PTHR10535 PTHR10535:SF4
NCBI CDD KOG3218; RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)
KEGG Orthology K03013; RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding GO:0005634nucleus GO:0006351transcription, DNA-templated GO:0005634nucleus GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G22320 : Eukaryotic rpb5 RNA polymerase subunit family protein
RAP-DB (Rice) LOC_Os04g41040.2,LOC_Os04g41040.1 : DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
MaizeGDB (Corn) Zm00025a010938
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G127500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
2 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
3 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
4 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
5 Sobic.003G098200 expressed protein -
6 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
7 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
8 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
9 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
10 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
11 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
12 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
13 Sobic.005G088900 AGAP007117-PA, putative, expressed -
14 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
15 Sobic.003G113900 zinc finger matrin-type protein 5, putative, expressed K13152: U11/U12 small nuclear ribonucleoprotein 20 kDa protein
16 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
17 Sobic.001G465500 radical SAM enzyme, putative, expressed -
18 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
19 Sobic.008G115600 RNA polymerase Rpb7, N-terminal domain containing protein, expressed -
20 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M


Gene co-expression network
sample Sobic006G127500 Sobic006G127500 Sobic001G436300 Sobic001G436300 Sobic006G127500--Sobic001G436300 Sobic001G157600 Sobic001G157600 Sobic006G127500--Sobic001G157600 Sobic006G251600 Sobic006G251600 Sobic006G127500--Sobic006G251600 Sobic003G028400 Sobic003G028400 Sobic006G127500--Sobic003G028400 Sobic003G098200 Sobic003G098200 Sobic006G127500--Sobic003G098200 Sobic004G343600 Sobic004G343600 Sobic006G127500--Sobic004G343600 Sobic001G097400 Sobic001G097400 Sobic006G127500--Sobic001G097400 Sobic001G235700 Sobic001G235700 Sobic006G127500--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic006G127500--Sobic001G107300 Sobic001G436300--Sobic006G127500 Sobic001G436300--Sobic001G235700 Sobic001G115500 Sobic001G115500 Sobic001G436300--Sobic001G115500 Sobic003G274400 Sobic003G274400 Sobic001G436300--Sobic003G274400 Sobic001G008500 Sobic001G008500 Sobic001G436300--Sobic001G008500 Sobic006G245700 Sobic006G245700 Sobic001G436300--Sobic006G245700 Sobic001G436300--Sobic004G343600 Sobic002G317600 Sobic002G317600 Sobic001G436300--Sobic002G317600 Sobic001G436300--Sobic001G097400 Sobic010G256200 Sobic010G256200 Sobic001G157600--Sobic010G256200 Sobic001G157600--Sobic006G245700 Sobic001G157600--Sobic006G127500 Sobic004G145300 Sobic004G145300 Sobic001G157600--Sobic004G145300 Sobic001G157600--Sobic001G436300 Sobic001G157600--Sobic001G115500 Sobic010G154000 Sobic010G154000 Sobic001G157600--Sobic010G154000 Sobic002G306600 Sobic002G306600 Sobic001G157600--Sobic002G306600 Sobic009G002000 Sobic009G002000 Sobic001G157600--Sobic009G002000 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic004G129500 Sobic004G129500 Sobic003G028400--Sobic004G129500 Sobic003G331000 Sobic003G331000 Sobic003G028400--Sobic003G331000 Sobic003G259600 Sobic003G259600 Sobic003G028400--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G028400--Sobic001G123600 Sobic007G031300 Sobic007G031300 Sobic003G028400--Sobic007G031300 Sobic002G123600 Sobic002G123600 Sobic003G028400--Sobic002G123600 Sobic001G465500 Sobic001G465500 Sobic003G028400--Sobic001G465500 Sobic007G030600 Sobic007G030600 Sobic003G028400--Sobic007G030600 Sobic001G242300 Sobic001G242300 Sobic003G028400--Sobic001G242300 Sobic003G098200--Sobic006G127500 Sobic003G098200--Sobic001G097400 Sobic003G257200 Sobic003G257200 Sobic003G098200--Sobic003G257200 Sobic003G436600 Sobic003G436600 Sobic003G098200--Sobic003G436600 Sobic003G098200--Sobic001G436300 Sobic009G233700 Sobic009G233700 Sobic003G098200--Sobic009G233700 Sobic003G098200--Sobic001G235700 Sobic003G425100 Sobic003G425100 Sobic003G098200--Sobic003G425100 Sobic004G227100 Sobic004G227100 Sobic003G098200--Sobic004G227100 Sobic004G343600--Sobic001G107300 Sobic002G386300 Sobic002G386300 Sobic004G343600--Sobic002G386300 Sobic006G013900 Sobic006G013900 Sobic004G343600--Sobic006G013900 Sobic010G032700 Sobic010G032700 Sobic004G343600--Sobic010G032700 Sobic004G036800 Sobic004G036800 Sobic004G343600--Sobic004G036800 Sobic004G343600--Sobic001G436300 Sobic004G343600--Sobic006G127500 Sobic001G412500 Sobic001G412500 Sobic004G343600--Sobic001G412500 Sobic002G184900 Sobic002G184900 Sobic004G343600--Sobic002G184900 Sobic001G097400--Sobic001G235700 Sobic001G097400--Sobic001G436300 Sobic005G088900 Sobic005G088900 Sobic001G097400--Sobic005G088900 Sobic001G097400--Sobic006G127500 Sobic002G110500 Sobic002G110500 Sobic001G097400--Sobic002G110500 Sobic001G097400--Sobic003G098200 Sobic003G432300 Sobic003G432300 Sobic001G097400--Sobic003G432300 Sobic001G149100 Sobic001G149100 Sobic001G097400--Sobic001G149100 Sobic001G097400--Sobic006G251600 Sobic001G235700--Sobic001G097400 Sobic001G235700--Sobic001G436300 Sobic004G208100 Sobic004G208100 Sobic001G235700--Sobic004G208100 Sobic004G190600 Sobic004G190600 Sobic001G235700--Sobic004G190600 Sobic001G440900 Sobic001G440900 Sobic001G235700--Sobic001G440900 Sobic002G303800 Sobic002G303800 Sobic001G235700--Sobic002G303800 Sobic002G133000 Sobic002G133000 Sobic001G235700--Sobic002G133000 Sobic001G235700--Sobic004G343600 Sobic001G235700--Sobic006G127500 Sobic001G107300--Sobic004G343600 Sobic001G505000 Sobic001G505000 Sobic001G107300--Sobic001G505000 Sobic004G047500 Sobic004G047500 Sobic001G107300--Sobic004G047500 Sobic002G353500 Sobic002G353500 Sobic001G107300--Sobic002G353500 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G107300--Sobic001G436300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.