Gene annotation
Transcriptome id Sobic.001G465500.1
Synonym Sb01g043670
Functional annotation radical SAM enzyme, putative, expressed
UniProt C5WTS9
Pfam PF13394 PF04055
Panther DB PTHR30544 PTHR30544:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0008173RNA methyltransferase activity GO:0006364rRNA processing GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT3G19630 : Radical SAM superfamily protein
RAP-DB (Rice) LOC_Os03g10520.1 : radical SAM enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a001155
Brachypodium KQK23055 , KQK23054 , KQK23057 , KQK23056 , KQK23053 , KQK23052
Barley HORVU4Hr1G070170.1 , HORVU4Hr1G070170.2 , HORVU4Hr1G070170.4
Wheat TraesCS4B02G259700 , TraesCS4A02G046100 , TraesCS4D02G258800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G078000 EDM2, putative, expressed -
2 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
3 Sobic.004G078500 Leucine Rich Repeat family protein, expressed -
4 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
5 Sobic.002G208400 regulator protein, putative, expressed -
6 Sobic.004G030400 expressed protein -
7 Sobic.003G331000 exostosin family domain containing protein, expressed -
8 Sobic.003G129300 uridine kinase, putative, expressed -
9 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
10 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
11 Sobic.002G264300 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
12 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
13 Sobic.006G032600 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
14 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
15 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
16 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
17 Sobic.003G360300 exostosin family domain containing protein, expressed -
18 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
19 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
20 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G465500 Sobic001G465500 Sobic008G078000 Sobic008G078000 Sobic001G465500--Sobic008G078000 Sobic002G335500 Sobic002G335500 Sobic001G465500--Sobic002G335500 Sobic004G078500 Sobic004G078500 Sobic001G465500--Sobic004G078500 Sobic003G028400 Sobic003G028400 Sobic001G465500--Sobic003G028400 Sobic002G208400 Sobic002G208400 Sobic001G465500--Sobic002G208400 Sobic004G030400 Sobic004G030400 Sobic001G465500--Sobic004G030400 Sobic003G331000 Sobic003G331000 Sobic001G465500--Sobic003G331000 Sobic003G129300 Sobic003G129300 Sobic001G465500--Sobic003G129300 Sobic001G436300 Sobic001G436300 Sobic001G465500--Sobic001G436300 Sobic008G078000--Sobic001G465500 Sobic005G017000 Sobic005G017000 Sobic008G078000--Sobic005G017000 Sobic008G078000--Sobic003G331000 Sobic003G343200 Sobic003G343200 Sobic008G078000--Sobic003G343200 Sobic005G160200 Sobic005G160200 Sobic008G078000--Sobic005G160200 Sobic002G123600 Sobic002G123600 Sobic008G078000--Sobic002G123600 Sobic004G118800 Sobic004G118800 Sobic008G078000--Sobic004G118800 Sobic010G222800 Sobic010G222800 Sobic008G078000--Sobic010G222800 Sobic002G239601 Sobic002G239601 Sobic008G078000--Sobic002G239601 Sobic002G335500--Sobic004G078500 Sobic001G081800 Sobic001G081800 Sobic002G335500--Sobic001G081800 Sobic002G196500 Sobic002G196500 Sobic002G335500--Sobic002G196500 Sobic001G005800 Sobic001G005800 Sobic002G335500--Sobic001G005800 Sobic009G002200 Sobic009G002200 Sobic002G335500--Sobic009G002200 Sobic003G259300 Sobic003G259300 Sobic002G335500--Sobic003G259300 Sobic002G006100 Sobic002G006100 Sobic002G335500--Sobic002G006100 Sobic004G145300 Sobic004G145300 Sobic002G335500--Sobic004G145300 Sobic002G335500--Sobic001G465500 Sobic004G078500--Sobic002G335500 Sobic004G078500--Sobic002G006100 Sobic004G078500--Sobic009G002200 Sobic002G112000 Sobic002G112000 Sobic004G078500--Sobic002G112000 Sobic005G018050 Sobic005G018050 Sobic004G078500--Sobic005G018050 Sobic004G078500--Sobic001G081800 Sobic004G078500--Sobic003G259300 Sobic003G290400 Sobic003G290400 Sobic004G078500--Sobic003G290400 Sobic004G078500--Sobic001G465500 Sobic004G129500 Sobic004G129500 Sobic003G028400--Sobic004G129500 Sobic003G028400--Sobic003G331000 Sobic003G259600 Sobic003G259600 Sobic003G028400--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G028400--Sobic001G123600 Sobic007G031300 Sobic007G031300 Sobic003G028400--Sobic007G031300 Sobic003G028400--Sobic002G123600 Sobic003G028400--Sobic001G465500 Sobic007G030600 Sobic007G030600 Sobic003G028400--Sobic007G030600 Sobic001G242300 Sobic001G242300 Sobic003G028400--Sobic001G242300 Sobic002G142700 Sobic002G142700 Sobic002G208400--Sobic002G142700 Sobic001G115500 Sobic001G115500 Sobic002G208400--Sobic001G115500 Sobic009G113100 Sobic009G113100 Sobic002G208400--Sobic009G113100 Sobic006G032600 Sobic006G032600 Sobic002G208400--Sobic006G032600 Sobic003G008600 Sobic003G008600 Sobic002G208400--Sobic003G008600 Sobic002G208400--Sobic004G030400 Sobic002G208400--Sobic003G259600 Sobic002G208400--Sobic001G123600 Sobic002G208400--Sobic003G129300 Sobic002G160700 Sobic002G160700 Sobic004G030400--Sobic002G160700 Sobic004G356200 Sobic004G356200 Sobic004G030400--Sobic004G356200 Sobic001G200200 Sobic001G200200 Sobic004G030400--Sobic001G200200 Sobic002G199400 Sobic002G199400 Sobic004G030400--Sobic002G199400 Sobic004G030400--Sobic001G123600 Sobic004G030400--Sobic002G142700 Sobic004G030400--Sobic002G208400 Sobic003G388000 Sobic003G388000 Sobic004G030400--Sobic003G388000 Sobic002G386600 Sobic002G386600 Sobic004G030400--Sobic002G386600 Sobic003G331000--Sobic003G259600 Sobic009G122900 Sobic009G122900 Sobic003G331000--Sobic009G122900 Sobic003G331000--Sobic003G028400 Sobic003G331000--Sobic002G123600 Sobic003G331000--Sobic001G123600 Sobic003G331000--Sobic001G242300 Sobic003G331000--Sobic005G160200 Sobic003G298900 Sobic003G298900 Sobic003G331000--Sobic003G298900 Sobic003G360300 Sobic003G360300 Sobic003G331000--Sobic003G360300 Sobic001G229300 Sobic001G229300 Sobic003G129300--Sobic001G229300 Sobic003G129300--Sobic001G123600 Sobic003G129300--Sobic002G142700 Sobic010G065600 Sobic010G065600 Sobic003G129300--Sobic010G065600 Sobic003G129300--Sobic002G208400 Sobic009G063800 Sobic009G063800 Sobic003G129300--Sobic009G063800 Sobic003G119900 Sobic003G119900 Sobic003G129300--Sobic003G119900 Sobic001G191900 Sobic001G191900 Sobic003G129300--Sobic001G191900 Sobic003G129300--Sobic001G465500 Sobic006G127500 Sobic006G127500 Sobic001G436300--Sobic006G127500 Sobic001G235700 Sobic001G235700 Sobic001G436300--Sobic001G235700 Sobic001G436300--Sobic001G115500 Sobic003G274400 Sobic003G274400 Sobic001G436300--Sobic003G274400 Sobic001G008500 Sobic001G008500 Sobic001G436300--Sobic001G008500 Sobic006G245700 Sobic006G245700 Sobic001G436300--Sobic006G245700 Sobic004G343600 Sobic004G343600 Sobic001G436300--Sobic004G343600 Sobic002G317600 Sobic002G317600 Sobic001G436300--Sobic002G317600 Sobic001G097400 Sobic001G097400 Sobic001G436300--Sobic001G097400
Octagon: transcription factors


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