Gene annotation
Transcriptome id Sobic.001G157600.1,Sobic.001G157600.2
Synonym Sb01g013730, MEE70, MSI1, ATMSI1
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1Z5S5T6 , C5WR88
Pfam PF00400 PF12265
Panther DB PTHR22850 PTHR22850:SF82
NCBI CDD -
KEGG Orthology K10752; RBBP4, HAT2, CAF1, histone-binding protein RBBP4
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G58230 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g43890.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007299 , Zm00025a017275 , Zm00025a007301
Brachypodium KQK14013
Barley -
Wheat TraesCS5D02G385600 , TraesCSU02G072700 , TraesCS5B02G378700
Populus PNT50956


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cDNA sequences
Sobic.001G157600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G256200 expressed protein -
2 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
3 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
4 Sobic.004G145300 OsFBD12 - F-box and FBD domain containing protein, expressed -
5 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
6 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
7 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
8 Sobic.002G306600 proteasome subunit, putative, expressed K12180: COPS7, COP9 signalosome complex subunit 7
9 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
10 Sobic.003G221500 CENP-C1, putative, expressed -
11 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
12 Sobic.001G465500 radical SAM enzyme, putative, expressed -
13 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
14 Sobic.001G123201 - -
15 Sobic.004G272900 expressed protein -
16 Sobic.004G258600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
17 Sobic.002G208400 regulator protein, putative, expressed -
18 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
19 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
20 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G157600 Sobic001G157600 Sobic010G256200 Sobic010G256200 Sobic001G157600--Sobic010G256200 Sobic006G245700 Sobic006G245700 Sobic001G157600--Sobic006G245700 Sobic006G127500 Sobic006G127500 Sobic001G157600--Sobic006G127500 Sobic004G145300 Sobic004G145300 Sobic001G157600--Sobic004G145300 Sobic001G436300 Sobic001G436300 Sobic001G157600--Sobic001G436300 Sobic001G115500 Sobic001G115500 Sobic001G157600--Sobic001G115500 Sobic010G154000 Sobic010G154000 Sobic001G157600--Sobic010G154000 Sobic002G306600 Sobic002G306600 Sobic001G157600--Sobic002G306600 Sobic009G002000 Sobic009G002000 Sobic001G157600--Sobic009G002000 Sobic010G256200--Sobic001G157600 Sobic001G123201 Sobic001G123201 Sobic010G256200--Sobic001G123201 Sobic004G242000 Sobic004G242000 Sobic010G256200--Sobic004G242000 Sobic002G051200 Sobic002G051200 Sobic010G256200--Sobic002G051200 Sobic001G154400 Sobic001G154400 Sobic010G256200--Sobic001G154400 Sobic009G060400 Sobic009G060400 Sobic010G256200--Sobic009G060400 Sobic009G030400 Sobic009G030400 Sobic010G256200--Sobic009G030400 Sobic004G318400 Sobic004G318400 Sobic010G256200--Sobic004G318400 Sobic004G272900 Sobic004G272900 Sobic010G256200--Sobic004G272900 Sobic004G256300 Sobic004G256300 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic008G125000 Sobic008G125000 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic006G245700--Sobic001G436300 Sobic003G221500 Sobic003G221500 Sobic006G245700--Sobic003G221500 Sobic006G245700--Sobic001G157600 Sobic006G127500--Sobic001G436300 Sobic006G127500--Sobic001G157600 Sobic006G251600 Sobic006G251600 Sobic006G127500--Sobic006G251600 Sobic003G028400 Sobic003G028400 Sobic006G127500--Sobic003G028400 Sobic003G098200 Sobic003G098200 Sobic006G127500--Sobic003G098200 Sobic004G343600 Sobic004G343600 Sobic006G127500--Sobic004G343600 Sobic001G097400 Sobic001G097400 Sobic006G127500--Sobic001G097400 Sobic001G235700 Sobic001G235700 Sobic006G127500--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic006G127500--Sobic001G107300 Sobic001G123100 Sobic001G123100 Sobic004G145300--Sobic001G123100 Sobic001G369800 Sobic001G369800 Sobic004G145300--Sobic001G369800 Sobic001G123300 Sobic001G123300 Sobic004G145300--Sobic001G123300 Sobic003G224700 Sobic003G224700 Sobic004G145300--Sobic003G224700 Sobic002G284100 Sobic002G284100 Sobic004G145300--Sobic002G284100 Sobic002G335500 Sobic002G335500 Sobic004G145300--Sobic002G335500 Sobic002G006100 Sobic002G006100 Sobic004G145300--Sobic002G006100 Sobic001G171100 Sobic001G171100 Sobic004G145300--Sobic001G171100 Sobic006G200901 Sobic006G200901 Sobic004G145300--Sobic006G200901 Sobic001G436300--Sobic006G127500 Sobic001G436300--Sobic001G235700 Sobic001G436300--Sobic001G115500 Sobic001G436300--Sobic003G274400 Sobic001G008500 Sobic001G008500 Sobic001G436300--Sobic001G008500 Sobic001G436300--Sobic006G245700 Sobic001G436300--Sobic004G343600 Sobic002G317600 Sobic002G317600 Sobic001G436300--Sobic002G317600 Sobic001G436300--Sobic001G097400 Sobic001G115500--Sobic008G125000 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic002G208400 Sobic002G208400 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic004G320100 Sobic004G320100 Sobic010G154000--Sobic004G320100 Sobic006G120800 Sobic006G120800 Sobic010G154000--Sobic006G120800 Sobic001G507400 Sobic001G507400 Sobic010G154000--Sobic001G507400 Sobic006G049100 Sobic006G049100 Sobic010G154000--Sobic006G049100 Sobic001G487100 Sobic001G487100 Sobic010G154000--Sobic001G487100 Sobic010G154000--Sobic006G245700 Sobic010G154000--Sobic003G221500 Sobic009G258400 Sobic009G258400 Sobic010G154000--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic010G154000--Sobic004G212700 Sobic003G004600 Sobic003G004600 Sobic002G306600--Sobic003G004600 Sobic010G059700 Sobic010G059700 Sobic002G306600--Sobic010G059700 Sobic001G458200 Sobic001G458200 Sobic002G306600--Sobic001G458200 Sobic003G128300 Sobic003G128300 Sobic002G306600--Sobic003G128300 Sobic002G306600--Sobic001G157600 Sobic002G306600--Sobic003G221500 Sobic002G267400 Sobic002G267400 Sobic002G306600--Sobic002G267400 Sobic002G306600--Sobic001G487100 Sobic004G088700 Sobic004G088700 Sobic002G306600--Sobic004G088700 Sobic002G277200 Sobic002G277200 Sobic009G002000--Sobic002G277200 Sobic009G002000--Sobic009G030400 Sobic009G201800 Sobic009G201800 Sobic009G002000--Sobic009G201800 Sobic009G002000--Sobic001G115500 Sobic008G118500 Sobic008G118500 Sobic009G002000--Sobic008G118500 Sobic005G084900 Sobic005G084900 Sobic009G002000--Sobic005G084900 Sobic009G002000--Sobic009G102900 Sobic009G002000--Sobic001G157600 Sobic009G258500 Sobic009G258500 Sobic009G002000--Sobic009G258500
Octagon: transcription factors


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