Gene annotation
Transcriptome id Sobic.004G145300.1
Synonym Sb04g018950
Functional annotation OsFBD12 - F-box and FBD domain containing protein, expressed
UniProt C5XRQ0
Pfam PF00646 PF08387
Panther DB PTHR32212 PTHR32212:SF76
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G13570 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os06g29710.1 : OsFBD12 - F-box and FBD domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK08571 , KQK08570 , KQK08572 , KQJ89338 , PNT64187 , KQK15162 , KQK08569
Barley HORVU5Hr1G012170.1 , HORVU5Hr1G012170.2 , HORVU3Hr1G052250.6 , HORVU3Hr1G052250.4 , HORVU3Hr1G052250.3 , HORVU3Hr1G052250.1 , HORVU2Hr1G012310.1
Wheat TraesCS5D02G063500 , TraesCS3B02G086300 , TraesCS3B02G086300 , TraesCS7B02G101200 , TraesCS6B02G054600 , TraesCS3D02G216400 , TraesCS3A02G072000 , TraesCS2B02G088600 , TraesCS2B02G111500 , TraesCS5D02G063500 , TraesCS6D02G075700 , TraesCS3D02G071900 , TraesCS4B02G115300 , TraesCS2A02G096100 , TraesCS5B02G057900 , TraesCS3B02G244500 , TraesCS5D02G063100 , TraesCS4D02G113000 , TraesCS5B02G058100 , TraesCS3D02G398500 , TraesCS3D02G422100 , TraesCS3B02G463300 , TraesCS3A02G427000 , TraesCS6D02G271700 , TraesCS4D02G059800 , TraesCS2A02G073700
Populus -


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cDNA sequences
Sobic.004G145300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G123100 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed K05350: beta-glucosidase
2 Sobic.001G369800 monocopper oxidase, putative, expressed -
3 Sobic.001G123300 Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed K05350: beta-glucosidase
4 Sobic.003G224700 glycosyltransferase family protein 1, putative, expressed -
5 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
6 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
7 Sobic.002G006100 phytosulfokine receptor precursor, putative, expressed -
8 Sobic.001G171100 expressed protein -
9 Sobic.006G200901 - -
10 Sobic.002G253900 growth regulator related protein, putative, expressed -
11 Sobic.004G078500 Leucine Rich Repeat family protein, expressed -
12 Sobic.002G343000 expressed protein -
13 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
14 Sobic.007G072100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBL44 - F-box domain and LRR containing protein, expressed -
15 Sobic.007G106300 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
16 Sobic.001G212600 a_IG002N01.7, putative, expressed -
17 Sobic.003G298900 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
18 Sobic.003G240100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G208800 aspartic proteinase, putative, expressed -
20 Sobic.002G345800 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G145300 Sobic004G145300 Sobic001G123100 Sobic001G123100 Sobic004G145300--Sobic001G123100 Sobic001G369800 Sobic001G369800 Sobic004G145300--Sobic001G369800 Sobic001G123300 Sobic001G123300 Sobic004G145300--Sobic001G123300 Sobic003G224700 Sobic003G224700 Sobic004G145300--Sobic003G224700 Sobic002G284100 Sobic002G284100 Sobic004G145300--Sobic002G284100 Sobic002G335500 Sobic002G335500 Sobic004G145300--Sobic002G335500 Sobic002G006100 Sobic002G006100 Sobic004G145300--Sobic002G006100 Sobic001G171100 Sobic001G171100 Sobic004G145300--Sobic001G171100 Sobic006G200901 Sobic006G200901 Sobic004G145300--Sobic006G200901 Sobic001G123100--Sobic002G284100 Sobic002G253900 Sobic002G253900 Sobic001G123100--Sobic002G253900 Sobic001G123100--Sobic001G369800 Sobic005G143100 Sobic005G143100 Sobic001G123100--Sobic005G143100 Sobic001G123100--Sobic004G145300 Sobic001G123100--Sobic001G123300 Sobic001G540700 Sobic001G540700 Sobic001G123100--Sobic001G540700 Sobic001G123100--Sobic002G006100 Sobic001G123100--Sobic003G224700 Sobic001G369800--Sobic002G284100 Sobic001G487200 Sobic001G487200 Sobic001G369800--Sobic001G487200 Sobic001G369800--Sobic001G123100 Sobic001G369800--Sobic001G540700 Sobic006G218900 Sobic006G218900 Sobic001G369800--Sobic006G218900 Sobic009G212100 Sobic009G212100 Sobic001G369800--Sobic009G212100 Sobic003G283600 Sobic003G283600 Sobic001G369800--Sobic003G283600 Sobic003G351900 Sobic003G351900 Sobic001G369800--Sobic003G351900 Sobic001G212600 Sobic001G212600 Sobic001G369800--Sobic001G212600 Sobic003G208800 Sobic003G208800 Sobic001G123300--Sobic003G208800 Sobic001G123300--Sobic001G123100 Sobic001G123300--Sobic004G145300 Sobic001G081100 Sobic001G081100 Sobic001G123300--Sobic001G081100 Sobic001G123300--Sobic002G284100 Sobic001G123300--Sobic001G171100 Sobic002G220700 Sobic002G220700 Sobic001G123300--Sobic002G220700 Sobic010G212700 Sobic010G212700 Sobic001G123300--Sobic010G212700 Sobic006G263400 Sobic006G263400 Sobic001G123300--Sobic006G263400 Sobic003G224700--Sobic001G123100 Sobic003G224700--Sobic004G145300 Sobic009G254000 Sobic009G254000 Sobic003G224700--Sobic009G254000 Sobic003G224700--Sobic001G123300 Sobic007G106300 Sobic007G106300 Sobic003G224700--Sobic007G106300 Sobic002G343000 Sobic002G343000 Sobic003G224700--Sobic002G343000 Sobic003G224700--Sobic002G284100 Sobic003G224700--Sobic001G369800 Sobic003G224700--Sobic006G200901 Sobic006G272800 Sobic006G272800 Sobic002G284100--Sobic006G272800 Sobic004G267600 Sobic004G267600 Sobic002G284100--Sobic004G267600 Sobic002G027600 Sobic002G027600 Sobic002G284100--Sobic002G027600 Sobic002G284100--Sobic001G369800 Sobic002G284100--Sobic001G123100 Sobic002G284100--Sobic001G540700 Sobic010G086000 Sobic010G086000 Sobic002G284100--Sobic010G086000 Sobic009G172950 Sobic009G172950 Sobic002G284100--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic002G284100--Sobic006G142500 Sobic004G078500 Sobic004G078500 Sobic002G335500--Sobic004G078500 Sobic001G081800 Sobic001G081800 Sobic002G335500--Sobic001G081800 Sobic002G196500 Sobic002G196500 Sobic002G335500--Sobic002G196500 Sobic001G005800 Sobic001G005800 Sobic002G335500--Sobic001G005800 Sobic009G002200 Sobic009G002200 Sobic002G335500--Sobic009G002200 Sobic003G259300 Sobic003G259300 Sobic002G335500--Sobic003G259300 Sobic002G335500--Sobic002G006100 Sobic002G335500--Sobic004G145300 Sobic001G465500 Sobic001G465500 Sobic002G335500--Sobic001G465500 Sobic002G006100--Sobic002G027600 Sobic002G006100--Sobic003G259300 Sobic002G006100--Sobic006G272800 Sobic002G006100--Sobic003G351900 Sobic001G425700 Sobic001G425700 Sobic002G006100--Sobic001G425700 Sobic003G298900 Sobic003G298900 Sobic002G006100--Sobic003G298900 Sobic002G006100--Sobic002G284100 Sobic002G006100--Sobic004G078500 Sobic009G225500 Sobic009G225500 Sobic002G006100--Sobic009G225500 Sobic001G171100--Sobic010G212700 Sobic003G022900 Sobic003G022900 Sobic001G171100--Sobic003G022900 Sobic001G377600 Sobic001G377600 Sobic001G171100--Sobic001G377600 Sobic008G072900 Sobic008G072900 Sobic001G171100--Sobic008G072900 Sobic003G027200 Sobic003G027200 Sobic001G171100--Sobic003G027200 Sobic005G164800 Sobic005G164800 Sobic001G171100--Sobic005G164800 Sobic003G029900 Sobic003G029900 Sobic001G171100--Sobic003G029900 Sobic001G171200 Sobic001G171200 Sobic001G171100--Sobic001G171200 Sobic006G097300 Sobic006G097300 Sobic001G171100--Sobic006G097300 Sobic006G200901--Sobic002G343000 Sobic006G143300 Sobic006G143300 Sobic006G200901--Sobic006G143300 Sobic004G014100 Sobic004G014100 Sobic006G200901--Sobic004G014100 Sobic009G148000 Sobic009G148000 Sobic006G200901--Sobic009G148000 Sobic006G200901--Sobic002G253900 Sobic003G217500 Sobic003G217500 Sobic006G200901--Sobic003G217500 Sobic006G186300 Sobic006G186300 Sobic006G200901--Sobic006G186300 Sobic002G230400 Sobic002G230400 Sobic006G200901--Sobic002G230400 Sobic004G075700 Sobic004G075700 Sobic006G200901--Sobic004G075700
Octagon: transcription factors


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