Gene annotation
Transcriptome id Sobic.006G200901.1
Synonym -
Functional annotation -
UniProt A0A1Z5REQ8
Pfam PF04144
Panther DB PTHR10687 PTHR10687:SF23
NCBI CDD KOG3088; Secretory carrier membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0015031protein transport


Orthologs (automatic annotation)
TAIR AT1G32050 : SCAMP family protein
RAP-DB (Rice) LOC_Os04g50890.1 : secretory carrier-associated membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a056917 , Zm00025a019086
Brachypodium KQK00877 , KQJ84348
Barley HORVU2Hr1G102780.10 , HORVU2Hr1G102780.11 , HORVU2Hr1G102780.12 , HORVU2Hr1G102780.13 , HORVU2Hr1G102780.6 , HORVU2Hr1G102780.7 , HORVU2Hr1G102780.4 , HORVU2Hr1G102780.5 , HORVU2Hr1G102780.2 , HORVU2Hr1G102780.3 , HORVU2Hr1G102780.1 , HORVU2Hr1G102780.8 , HORVU2Hr1G102780.9
Wheat TraesCS2D02G212600 , TraesCS2B02G230200 , TraesCS2B02G465100 , TraesCS2A02G203100 , TraesCS2A02G203100 , TraesCS2A02G203100 , TraesCS2A02G443900 , TraesCS2D02G443100 , TraesCS2D02G443100 , TraesCS2D02G443100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G343000 expressed protein -
2 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
3 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
4 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
5 Sobic.002G253900 growth regulator related protein, putative, expressed -
6 Sobic.003G217500 expressed protein -
7 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
8 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
9 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
10 Sobic.005G033700 heavy-metal-associated domain-containing protein, putative, expressed -
11 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
12 Sobic.001G081800 GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
13 Sobic.004G145300 OsFBD12 - F-box and FBD domain containing protein, expressed -
14 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
15 Sobic.001G123100 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed K05350: beta-glucosidase
16 Sobic.008G045800 PHD-finger family protein, expressed -
17 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
18 Sobic.004G250600 NHL repeat-containing protein, putative, expressed -
19 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
20 Sobic.002G354800 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic006G200901 Sobic006G200901 Sobic002G343000 Sobic002G343000 Sobic006G200901--Sobic002G343000 Sobic006G143300 Sobic006G143300 Sobic006G200901--Sobic006G143300 Sobic004G014100 Sobic004G014100 Sobic006G200901--Sobic004G014100 Sobic009G148000 Sobic009G148000 Sobic006G200901--Sobic009G148000 Sobic002G253900 Sobic002G253900 Sobic006G200901--Sobic002G253900 Sobic003G217500 Sobic003G217500 Sobic006G200901--Sobic003G217500 Sobic006G186300 Sobic006G186300 Sobic006G200901--Sobic006G186300 Sobic002G230400 Sobic002G230400 Sobic006G200901--Sobic002G230400 Sobic004G075700 Sobic004G075700 Sobic006G200901--Sobic004G075700 Sobic002G343000--Sobic009G148000 Sobic002G343000--Sobic006G200901 Sobic002G343000--Sobic004G014100 Sobic002G343000--Sobic006G143300 Sobic002G343000--Sobic002G253900 Sobic002G343000--Sobic003G217500 Sobic002G343000--Sobic002G230400 Sobic008G041900 Sobic008G041900 Sobic002G343000--Sobic008G041900 Sobic002G343000--Sobic006G186300 Sobic005G033700 Sobic005G033700 Sobic006G143300--Sobic005G033700 Sobic006G143300--Sobic006G200901 Sobic006G143300--Sobic002G343000 Sobic006G143300--Sobic004G014100 Sobic001G081800 Sobic001G081800 Sobic006G143300--Sobic001G081800 Sobic002G349000 Sobic002G349000 Sobic006G143300--Sobic002G349000 Sobic006G143300--Sobic002G230400 Sobic005G164800 Sobic005G164800 Sobic006G143300--Sobic005G164800 Sobic006G143300--Sobic006G186300 Sobic004G014100--Sobic002G343000 Sobic004G014100--Sobic006G200901 Sobic005G160200 Sobic005G160200 Sobic004G014100--Sobic005G160200 Sobic004G014100--Sobic006G143300 Sobic003G343200 Sobic003G343200 Sobic004G014100--Sobic003G343200 Sobic004G014100--Sobic002G349000 Sobic004G014100--Sobic002G230400 Sobic002G354800 Sobic002G354800 Sobic004G014100--Sobic002G354800 Sobic006G140300 Sobic006G140300 Sobic004G014100--Sobic006G140300 Sobic009G148000--Sobic002G343000 Sobic009G148000--Sobic002G253900 Sobic009G148000--Sobic006G200901 Sobic009G148000--Sobic006G186300 Sobic009G148000--Sobic003G217500 Sobic001G005800 Sobic001G005800 Sobic009G148000--Sobic001G005800 Sobic009G148000--Sobic004G014100 Sobic009G148000--Sobic008G041900 Sobic004G250600 Sobic004G250600 Sobic009G148000--Sobic004G250600 Sobic002G253900--Sobic009G148000 Sobic001G123100 Sobic001G123100 Sobic002G253900--Sobic001G123100 Sobic002G253900--Sobic006G200901 Sobic002G253900--Sobic002G343000 Sobic002G253900--Sobic001G005800 Sobic001G540700 Sobic001G540700 Sobic002G253900--Sobic001G540700 Sobic006G218900 Sobic006G218900 Sobic002G253900--Sobic006G218900 Sobic002G284100 Sobic002G284100 Sobic002G253900--Sobic002G284100 Sobic002G006100 Sobic002G006100 Sobic002G253900--Sobic002G006100 Sobic003G217500--Sobic004G250600 Sobic003G217500--Sobic006G200901 Sobic003G217500--Sobic004G014100 Sobic003G217500--Sobic002G343000 Sobic003G217500--Sobic009G148000 Sobic003G217500--Sobic006G140300 Sobic004G196800 Sobic004G196800 Sobic003G217500--Sobic004G196800 Sobic003G304500 Sobic003G304500 Sobic003G217500--Sobic003G304500 Sobic003G217500--Sobic006G186300 Sobic010G047300 Sobic010G047300 Sobic006G186300--Sobic010G047300 Sobic007G041200 Sobic007G041200 Sobic006G186300--Sobic007G041200 Sobic002G122000 Sobic002G122000 Sobic006G186300--Sobic002G122000 Sobic006G186300--Sobic004G075700 Sobic006G186300--Sobic002G230400 Sobic010G084800 Sobic010G084800 Sobic006G186300--Sobic010G084800 Sobic001G305100 Sobic001G305100 Sobic006G186300--Sobic001G305100 Sobic005G131800 Sobic005G131800 Sobic006G186300--Sobic005G131800 Sobic005G171800 Sobic005G171800 Sobic006G186300--Sobic005G171800 Sobic002G230400--Sobic002G354800 Sobic002G230400--Sobic006G186300 Sobic002G230400--Sobic004G075700 Sobic002G230400--Sobic006G143300 Sobic002G230400--Sobic004G014100 Sobic004G163700 Sobic004G163700 Sobic002G230400--Sobic004G163700 Sobic010G112700 Sobic010G112700 Sobic002G230400--Sobic010G112700 Sobic002G230400--Sobic002G343000 Sobic010G273800 Sobic010G273800 Sobic002G230400--Sobic010G273800 Sobic004G075700--Sobic006G186300 Sobic010G207400 Sobic010G207400 Sobic004G075700--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic004G075700--Sobic006G015800 Sobic004G075700--Sobic001G305100 Sobic001G278700 Sobic001G278700 Sobic004G075700--Sobic001G278700 Sobic003G026900 Sobic003G026900 Sobic004G075700--Sobic003G026900 Sobic006G061100 Sobic006G061100 Sobic004G075700--Sobic006G061100 Sobic006G161300 Sobic006G161300 Sobic004G075700--Sobic006G161300 Sobic004G075700--Sobic005G131800
Octagon: transcription factors


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