Gene annotation
Transcriptome id Sobic.006G143300.1
Synonym Sb06g022250
Functional annotation nuclear transport factor 2, putative, expressed
UniProt C5YBZ2
Pfam PF00076 PF02136
Panther DB PTHR10693 PTHR10693:SF22
NCBI CDD KOG0116; RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0006810transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT5G43960 : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
RAP-DB (Rice) LOC_Os04g43150.2 : nuclear transport factor 2, putative, expressed
MaizeGDB (Corn) Zm00025a010670
Brachypodium KQJ83517 , KQJ83518
Barley HORVU2Hr1G088550.6 , HORVU2Hr1G088550.7 , HORVU2Hr1G088550.4 , HORVU2Hr1G088550.5 , HORVU2Hr1G088550.2 , HORVU2Hr1G088550.3 , HORVU2Hr1G088550.1 , HORVU2Hr1G088550.8 , HORVU2Hr1G088550.9 , HORVU2Hr1G088550.14 , HORVU2Hr1G088550.15 , HORVU2Hr1G088550.10 , HORVU2Hr1G088550.11 , HORVU2Hr1G088550.12 , HORVU2Hr1G088550.13
Wheat TraesCS2A02G366900 , TraesCS2D02G363800 , TraesCS2B02G384400 , TraesCS2B02G384400
Populus -


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cDNA sequences
Sobic.006G143300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G033700 heavy-metal-associated domain-containing protein, putative, expressed -
2 Sobic.006G200901 - -
3 Sobic.002G343000 expressed protein -
4 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
5 Sobic.001G081800 GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
6 Sobic.002G349000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
7 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
8 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
9 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
10 Sobic.002G086500 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
11 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
12 Sobic.002G354800 zinc finger family protein, putative, expressed -
13 Sobic.007G191200 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
14 Sobic.007G056900 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
15 Sobic.010G193700 expressed protein -
16 Sobic.001G171100 expressed protein -
17 Sobic.004G218000 SET domain containing protein, expressed -
18 Sobic.002G147466 - -
19 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
20 Sobic.007G066200 - -


Gene co-expression network
sample Sobic006G143300 Sobic006G143300 Sobic005G033700 Sobic005G033700 Sobic006G143300--Sobic005G033700 Sobic006G200901 Sobic006G200901 Sobic006G143300--Sobic006G200901 Sobic002G343000 Sobic002G343000 Sobic006G143300--Sobic002G343000 Sobic004G014100 Sobic004G014100 Sobic006G143300--Sobic004G014100 Sobic001G081800 Sobic001G081800 Sobic006G143300--Sobic001G081800 Sobic002G349000 Sobic002G349000 Sobic006G143300--Sobic002G349000 Sobic002G230400 Sobic002G230400 Sobic006G143300--Sobic002G230400 Sobic005G164800 Sobic005G164800 Sobic006G143300--Sobic005G164800 Sobic006G186300 Sobic006G186300 Sobic006G143300--Sobic006G186300 Sobic005G033700--Sobic006G143300 Sobic002G122000 Sobic002G122000 Sobic005G033700--Sobic002G122000 Sobic005G033700--Sobic006G186300 Sobic008G041900 Sobic008G041900 Sobic005G033700--Sobic008G041900 Sobic005G033700--Sobic001G081800 Sobic001G171100 Sobic001G171100 Sobic005G033700--Sobic001G171100 Sobic005G033700--Sobic006G200901 Sobic005G033700--Sobic002G343000 Sobic003G029900 Sobic003G029900 Sobic005G033700--Sobic003G029900 Sobic006G200901--Sobic002G343000 Sobic006G200901--Sobic006G143300 Sobic006G200901--Sobic004G014100 Sobic009G148000 Sobic009G148000 Sobic006G200901--Sobic009G148000 Sobic002G253900 Sobic002G253900 Sobic006G200901--Sobic002G253900 Sobic003G217500 Sobic003G217500 Sobic006G200901--Sobic003G217500 Sobic006G200901--Sobic006G186300 Sobic006G200901--Sobic002G230400 Sobic004G075700 Sobic004G075700 Sobic006G200901--Sobic004G075700 Sobic002G343000--Sobic009G148000 Sobic002G343000--Sobic006G200901 Sobic002G343000--Sobic004G014100 Sobic002G343000--Sobic006G143300 Sobic002G343000--Sobic002G253900 Sobic002G343000--Sobic003G217500 Sobic002G343000--Sobic002G230400 Sobic002G343000--Sobic008G041900 Sobic002G343000--Sobic006G186300 Sobic004G014100--Sobic002G343000 Sobic004G014100--Sobic006G200901 Sobic005G160200 Sobic005G160200 Sobic004G014100--Sobic005G160200 Sobic004G014100--Sobic006G143300 Sobic003G343200 Sobic003G343200 Sobic004G014100--Sobic003G343200 Sobic004G014100--Sobic002G349000 Sobic004G014100--Sobic002G230400 Sobic002G354800 Sobic002G354800 Sobic004G014100--Sobic002G354800 Sobic006G140300 Sobic006G140300 Sobic004G014100--Sobic006G140300 Sobic002G238800 Sobic002G238800 Sobic001G081800--Sobic002G238800 Sobic001G081800--Sobic006G143300 Sobic002G335500 Sobic002G335500 Sobic001G081800--Sobic002G335500 Sobic001G081800--Sobic002G354800 Sobic001G081800--Sobic005G164800 Sobic001G081800--Sobic002G343000 Sobic001G081800--Sobic001G171100 Sobic001G081800--Sobic005G033700 Sobic003G379900 Sobic003G379900 Sobic001G081800--Sobic003G379900 Sobic002G221100 Sobic002G221100 Sobic002G349000--Sobic002G221100 Sobic001G324800 Sobic001G324800 Sobic002G349000--Sobic001G324800 Sobic002G349000--Sobic006G143300 Sobic004G218000 Sobic004G218000 Sobic002G349000--Sobic004G218000 Sobic002G349000--Sobic002G354800 Sobic002G349000--Sobic004G014100 Sobic009G156200 Sobic009G156200 Sobic002G349000--Sobic009G156200 Sobic001G425900 Sobic001G425900 Sobic002G349000--Sobic001G425900 Sobic004G262100 Sobic004G262100 Sobic002G349000--Sobic004G262100 Sobic002G230400--Sobic002G354800 Sobic002G230400--Sobic006G186300 Sobic002G230400--Sobic004G075700 Sobic002G230400--Sobic006G143300 Sobic002G230400--Sobic004G014100 Sobic004G163700 Sobic004G163700 Sobic002G230400--Sobic004G163700 Sobic010G112700 Sobic010G112700 Sobic002G230400--Sobic010G112700 Sobic002G230400--Sobic002G343000 Sobic010G273800 Sobic010G273800 Sobic002G230400--Sobic010G273800 Sobic003G217300 Sobic003G217300 Sobic005G164800--Sobic003G217300 Sobic005G164800--Sobic004G218000 Sobic005G164800--Sobic001G171100 Sobic001G377600 Sobic001G377600 Sobic005G164800--Sobic001G377600 Sobic010G067200 Sobic010G067200 Sobic005G164800--Sobic010G067200 Sobic003G027200 Sobic003G027200 Sobic005G164800--Sobic003G027200 Sobic007G193300 Sobic007G193300 Sobic005G164800--Sobic007G193300 Sobic008G072900 Sobic008G072900 Sobic005G164800--Sobic008G072900 Sobic007G191200 Sobic007G191200 Sobic005G164800--Sobic007G191200 Sobic010G047300 Sobic010G047300 Sobic006G186300--Sobic010G047300 Sobic007G041200 Sobic007G041200 Sobic006G186300--Sobic007G041200 Sobic006G186300--Sobic002G122000 Sobic006G186300--Sobic004G075700 Sobic006G186300--Sobic002G230400 Sobic010G084800 Sobic010G084800 Sobic006G186300--Sobic010G084800 Sobic001G305100 Sobic001G305100 Sobic006G186300--Sobic001G305100 Sobic005G131800 Sobic005G131800 Sobic006G186300--Sobic005G131800 Sobic005G171800 Sobic005G171800 Sobic006G186300--Sobic005G171800
Octagon: transcription factors


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