Gene annotation
| Transcriptome id | Sobic.002G354800.12,Sobic.002G354800.6,Sobic.002G354800.5,Sobic.002G354800.9,Sobic.002G354800.10,Sobic.002G354800.3,Sobic.002G354800.1,Sobic.002G354800.2,Sobic.002G354800.4,Sobic.002G354800.13,Sobic.002G354800.8,Sobic.002G354800.7,Sobic.002G354800.11 |
|---|---|
| Synonym | |
| Functional annotation | zinc finger family protein, putative, expressed |
| UniProt | A0A1W0W745 , A0A1B6QF75 , A0A1B6QF71 , A0A1W0W6X4 , A0A1B6QF73 , A0A1B6QF69 , A0A1W0W6Y5 , A0A1B6QF67 , A0A1W0W6Z4 |
| Pfam | PF00076 |
| Panther DB | PTHR24009 PTHR24009:SF0 |
| NCBI CDD | KOG0106; Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) KOG0105Alternative splicing factor ASF/SF2 (RRM superfamily) KOG0106Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) KOG0123Polyadenylate-binding protein (RRM superfamily) |
| KEGG Orthology | - |
| Gene Ontology | GO:0003676; nucleic acid binding |
Orthologs (automatic annotation)
| TAIR | AT3G51950 : CCCH-type zinc fingerfamily protein with RNA-binding domain,Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g39440.1 : zinc finger family protein, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.002G354800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G230400 | ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed | K11855: ubiquitin carboxyl-terminal hydrolase 36/42 |
| 2 | Sobic.002G315100 | expressed protein | K15083: DNA repair protein RAD16 |
| 3 | Sobic.006G184200 | zinc RING finger protein, putative, expressed | K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins |
| 4 | Sobic.002G349000 | UAA transporter family domain containing protein, expressed | K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3 |
| 5 | Sobic.001G081800 | GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed | - |
| 6 | Sobic.004G014100 | sialyltransferase family domain containing protein, expressed | - |
| 7 | Sobic.006G143300 | nuclear transport factor 2, putative, expressed | - |
| 8 | Sobic.003G055200 | expressed protein | - |
| 9 | Sobic.001G278700 | Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed | K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase |
| 10 | Sobic.001G194100 | DEFL6 - Defensin and Defensin-like DEFL family, expressed | - |
| 11 | Sobic.003G042200 | uncharacterized protein At4g06744 precursor, putative, expressed | - |
| 12 | Sobic.004G196800 | tetratricopeptide repeat containing protein, putative, expressed | - |
| 13 | Sobic.002G238800 | mago nashi, putative, expressed | K12877: protein mago nashi |
| 14 | Sobic.004G163700 | "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed | K00700: GBE1, 1,4-alpha-glucan branching enzyme |
| 15 | Sobic.002G221100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.003G379900 | plus-3 domain containing protein, putative, expressed | - |
| 17 | Sobic.004G218000 | SET domain containing protein, expressed | - |
| 18 | Sobic.008G174500 | expressed protein | - |
| 19 | Sobic.010G273800 | "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed | K00700: GBE1, 1,4-alpha-glucan branching enzyme |
| 20 | Sobic.010G193700 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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