Gene annotation
Transcriptome id Sobic.003G055200.2
Synonym
Functional annotation expressed protein
UniProt A0A1W0VVX3
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G30480 : -
RAP-DB (Rice) LOC_Os01g07330.1 : expressed protein
MaizeGDB (Corn) Zm00025a035698
Brachypodium -
Barley HORVU3Hr1G017490.75 , HORVU3Hr1G017490.72 , HORVU3Hr1G017490.71 , HORVU3Hr1G017490.19 , HORVU3Hr1G017490.16 , HORVU3Hr1G017490.17 , HORVU3Hr1G017490.9 , HORVU3Hr1G017490.3 , HORVU3Hr1G017490.4 , HORVU3Hr1G017490.29 , HORVU3Hr1G017490.28 , HORVU3Hr1G017490.24 , HORVU3Hr1G017490.26 , HORVU3Hr1G017490.21 , HORVU3Hr1G017490.20 , HORVU3Hr1G017490.23 , HORVU3Hr1G017490.22 , HORVU3Hr1G017490.32 , HORVU3Hr1G017490.30 , HORVU3Hr1G017490.36 , HORVU3Hr1G017490.37 , HORVU3Hr1G017490.34 , HORVU3Hr1G017490.35 , HORVU3Hr1G017490.38 , HORVU3Hr1G017490.45 , HORVU3Hr1G017490.43 , HORVU3Hr1G017490.41 , HORVU3Hr1G017490.48 , HORVU3Hr1G017490.54 , HORVU3Hr1G017490.57 , HORVU3Hr1G017490.50 , HORVU3Hr1G017490.52 , HORVU3Hr1G017490.58 , HORVU3Hr1G017490.59 , HORVU3Hr1G017490.44 , HORVU3Hr1G017490.69 , HORVU3Hr1G017490.68 , HORVU3Hr1G017490.60 , HORVU3Hr1G017490.63 , HORVU3Hr1G017490.65 , HORVU3Hr1G017490.64 , HORVU3Hr1G017490.66
Wheat TraesCS3D02G097400 , TraesCS3B02G112600 , TraesCS3B02G112600 , TraesCS3A02G096800 , TraesCS3A02G096800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G354800 zinc finger family protein, putative, expressed -
2 Sobic.010G207900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prenyltransferase, putative, expressed K09833: HPT, HGGT, homogentisate phytyltransferase / homogentisate geranylgeranyltransferase
3 Sobic.002G315100 expressed protein K15083: DNA repair protein RAD16
4 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
5 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
6 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
7 Sobic.002G174500 OsFBX252 - F-box domain containing protein, expressed -
8 Sobic.007G086701 - -
9 Sobic.006G257600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05609: UCHL3, ubiquitin carboxyl-terminal hydrolase L3
10 Sobic.003G284700 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
11 Sobic.006G018751 - -
12 Sobic.004G322901 - -
13 Sobic.010G223500 dnaJ domain containing protein, expressed -
14 Sobic.001G194100 DEFL6 - Defensin and Defensin-like DEFL family, expressed -
15 Sobic.007G126000 - -
16 Sobic.010G109300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@acylphosphatase, putative, expressed K01512: acylphosphatase
17 Sobic.009G056100 splicing factor, arginine/serine-rich, putative, expressed -
18 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
19 Sobic.010G193700 expressed protein -
20 Sobic.005G041900 - -


Gene co-expression network
sample Sobic003G055200 Sobic003G055200 Sobic002G354800 Sobic002G354800 Sobic003G055200--Sobic002G354800 Sobic010G207900 Sobic010G207900 Sobic003G055200--Sobic010G207900 Sobic002G315100 Sobic002G315100 Sobic003G055200--Sobic002G315100 Sobic001G278700 Sobic001G278700 Sobic003G055200--Sobic001G278700 Sobic002G230400 Sobic002G230400 Sobic003G055200--Sobic002G230400 Sobic004G163700 Sobic004G163700 Sobic003G055200--Sobic004G163700 Sobic002G174500 Sobic002G174500 Sobic003G055200--Sobic002G174500 Sobic007G086701 Sobic007G086701 Sobic003G055200--Sobic007G086701 Sobic006G257600 Sobic006G257600 Sobic003G055200--Sobic006G257600 Sobic002G354800--Sobic002G230400 Sobic002G354800--Sobic002G315100 Sobic006G184200 Sobic006G184200 Sobic002G354800--Sobic006G184200 Sobic002G349000 Sobic002G349000 Sobic002G354800--Sobic002G349000 Sobic001G081800 Sobic001G081800 Sobic002G354800--Sobic001G081800 Sobic004G014100 Sobic004G014100 Sobic002G354800--Sobic004G014100 Sobic006G143300 Sobic006G143300 Sobic002G354800--Sobic006G143300 Sobic002G354800--Sobic003G055200 Sobic002G354800--Sobic001G278700 Sobic006G018751 Sobic006G018751 Sobic010G207900--Sobic006G018751 Sobic010G207900--Sobic007G086701 Sobic007G126000 Sobic007G126000 Sobic010G207900--Sobic007G126000 Sobic001G264600 Sobic001G264600 Sobic010G207900--Sobic001G264600 Sobic004G322901 Sobic004G322901 Sobic010G207900--Sobic004G322901 Sobic010G207900--Sobic002G174500 Sobic009G056100 Sobic009G056100 Sobic010G207900--Sobic009G056100 Sobic005G083280 Sobic005G083280 Sobic010G207900--Sobic005G083280 Sobic001G261529 Sobic001G261529 Sobic010G207900--Sobic001G261529 Sobic002G315100--Sobic002G354800 Sobic006G091850 Sobic006G091850 Sobic002G315100--Sobic006G091850 Sobic005G160200 Sobic005G160200 Sobic002G315100--Sobic005G160200 Sobic002G315100--Sobic003G055200 Sobic002G315100--Sobic002G230400 Sobic002G315100--Sobic004G014100 Sobic002G315100--Sobic006G143300 Sobic009G069200 Sobic009G069200 Sobic002G315100--Sobic009G069200 Sobic002G315100--Sobic006G184200 Sobic004G075700 Sobic004G075700 Sobic001G278700--Sobic004G075700 Sobic006G015800 Sobic006G015800 Sobic001G278700--Sobic006G015800 Sobic010G273800 Sobic010G273800 Sobic001G278700--Sobic010G273800 Sobic001G278700--Sobic002G354800 Sobic007G150700 Sobic007G150700 Sobic001G278700--Sobic007G150700 Sobic001G278700--Sobic002G230400 Sobic001G278700--Sobic003G055200 Sobic001G278700--Sobic004G163700 Sobic006G161300 Sobic006G161300 Sobic001G278700--Sobic006G161300 Sobic002G230400--Sobic002G354800 Sobic006G186300 Sobic006G186300 Sobic002G230400--Sobic006G186300 Sobic002G230400--Sobic004G075700 Sobic002G230400--Sobic006G143300 Sobic002G230400--Sobic004G014100 Sobic002G230400--Sobic004G163700 Sobic010G112700 Sobic010G112700 Sobic002G230400--Sobic010G112700 Sobic002G343000 Sobic002G343000 Sobic002G230400--Sobic002G343000 Sobic002G230400--Sobic010G273800 Sobic001G194100 Sobic001G194100 Sobic004G163700--Sobic001G194100 Sobic004G163700--Sobic006G015800 Sobic004G262100 Sobic004G262100 Sobic004G163700--Sobic004G262100 Sobic001G425900 Sobic001G425900 Sobic004G163700--Sobic001G425900 Sobic006G046300 Sobic006G046300 Sobic004G163700--Sobic006G046300 Sobic007G041200 Sobic007G041200 Sobic004G163700--Sobic007G041200 Sobic003G092600 Sobic003G092600 Sobic004G163700--Sobic003G092600 Sobic004G163700--Sobic010G273800 Sobic001G083900 Sobic001G083900 Sobic004G163700--Sobic001G083900 Sobic002G147466 Sobic002G147466 Sobic002G174500--Sobic002G147466 Sobic002G174500--Sobic004G322901 Sobic002G174500--Sobic010G207900 Sobic002G174500--Sobic007G126000 Sobic002G174500--Sobic005G083280 Sobic002G174500--Sobic001G261529 Sobic002G174500--Sobic006G018751 Sobic009G014900 Sobic009G014900 Sobic002G174500--Sobic009G014900 Sobic002G174500--Sobic007G086701 Sobic007G086701--Sobic006G018751 Sobic007G086701--Sobic001G264600 Sobic002G266600 Sobic002G266600 Sobic007G086701--Sobic002G266600 Sobic007G086701--Sobic010G207900 Sobic007G086701--Sobic001G261529 Sobic002G066700 Sobic002G066700 Sobic007G086701--Sobic002G066700 Sobic007G086701--Sobic005G083280 Sobic007G086701--Sobic004G322901 Sobic002G099866 Sobic002G099866 Sobic007G086701--Sobic002G099866 Sobic009G113100 Sobic009G113100 Sobic006G257600--Sobic009G113100 Sobic006G257600--Sobic003G055200 Sobic006G257600--Sobic002G315100 Sobic006G257600--Sobic002G354800 Sobic010G223500 Sobic010G223500 Sobic006G257600--Sobic010G223500 Sobic006G257600--Sobic009G069200 Sobic002G306600 Sobic002G306600 Sobic006G257600--Sobic002G306600 Sobic006G015500 Sobic006G015500 Sobic006G257600--Sobic006G015500 Sobic003G284700 Sobic003G284700 Sobic006G257600--Sobic003G284700
Octagon: transcription factors


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