Gene annotation
Transcriptome id Sobic.001G194100.1
Synonym Sb01g017090
Functional annotation DEFL6 - Defensin and Defensin-like DEFL family, expressed
UniProt C5WVD8
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g37290.1 : DEFL6 - Defensin and Defensin-like DEFL family, expressed
MaizeGDB (Corn) Zm00025a006298
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G194100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G062101 - -
2 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
3 Sobic.003G042200 uncharacterized protein At4g06744 precursor, putative, expressed -
4 Sobic.004G065800 - -
5 Sobic.008G174500 expressed protein -
6 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
7 Sobic.004G339900 expressed protein -
8 Sobic.002G420400 - -
9 Sobic.002G354800 zinc finger family protein, putative, expressed -
10 Sobic.003G379900 plus-3 domain containing protein, putative, expressed -
11 Sobic.001G485500 - -
12 Sobic.006G184200 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
13 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
14 Sobic.010G223500 dnaJ domain containing protein, expressed -
15 Sobic.004G071050 - -
16 Sobic.001G425900 EDM2, putative, expressed -
17 Sobic.010G109300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@acylphosphatase, putative, expressed K01512: acylphosphatase
18 Sobic.003G092600 seven in absentia protein family protein, expressed -
19 Sobic.007G041200 cytochrome P450, putative, expressed -
20 Sobic.002G349000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3


Gene co-expression network
sample Sobic001G194100 Sobic001G194100 Sobic003G062101 Sobic003G062101 Sobic001G194100--Sobic003G062101 Sobic004G163700 Sobic004G163700 Sobic001G194100--Sobic004G163700 Sobic003G042200 Sobic003G042200 Sobic001G194100--Sobic003G042200 Sobic004G065800 Sobic004G065800 Sobic001G194100--Sobic004G065800 Sobic008G174500 Sobic008G174500 Sobic001G194100--Sobic008G174500 Sobic004G262100 Sobic004G262100 Sobic001G194100--Sobic004G262100 Sobic004G339900 Sobic004G339900 Sobic001G194100--Sobic004G339900 Sobic002G420400 Sobic002G420400 Sobic001G194100--Sobic002G420400 Sobic002G354800 Sobic002G354800 Sobic001G194100--Sobic002G354800 Sobic003G062101--Sobic008G174500 Sobic003G062101--Sobic001G194100 Sobic003G062101--Sobic003G042200 Sobic003G062101--Sobic004G262100 Sobic003G062101--Sobic004G065800 Sobic009G156200 Sobic009G156200 Sobic003G062101--Sobic009G156200 Sobic010G223500 Sobic010G223500 Sobic003G062101--Sobic010G223500 Sobic003G062101--Sobic004G339900 Sobic004G071050 Sobic004G071050 Sobic003G062101--Sobic004G071050 Sobic004G163700--Sobic001G194100 Sobic006G015800 Sobic006G015800 Sobic004G163700--Sobic006G015800 Sobic004G163700--Sobic004G262100 Sobic001G425900 Sobic001G425900 Sobic004G163700--Sobic001G425900 Sobic006G046300 Sobic006G046300 Sobic004G163700--Sobic006G046300 Sobic007G041200 Sobic007G041200 Sobic004G163700--Sobic007G041200 Sobic003G092600 Sobic003G092600 Sobic004G163700--Sobic003G092600 Sobic010G273800 Sobic010G273800 Sobic004G163700--Sobic010G273800 Sobic001G083900 Sobic001G083900 Sobic004G163700--Sobic001G083900 Sobic003G042200--Sobic008G174500 Sobic003G042200--Sobic001G194100 Sobic003G042200--Sobic003G062101 Sobic003G042200--Sobic009G156200 Sobic006G184200 Sobic006G184200 Sobic003G042200--Sobic006G184200 Sobic003G379900 Sobic003G379900 Sobic003G042200--Sobic003G379900 Sobic010G009600 Sobic010G009600 Sobic003G042200--Sobic010G009600 Sobic002G349000 Sobic002G349000 Sobic003G042200--Sobic002G349000 Sobic002G238800 Sobic002G238800 Sobic003G042200--Sobic002G238800 Sobic004G065800--Sobic001G194100 Sobic004G065800--Sobic004G071050 Sobic004G065800--Sobic004G339900 Sobic004G065800--Sobic003G062101 Sobic009G033500 Sobic009G033500 Sobic004G065800--Sobic009G033500 Sobic004G065800--Sobic002G420400 Sobic004G065800--Sobic007G041200 Sobic001G485200 Sobic001G485200 Sobic004G065800--Sobic001G485200 Sobic010G106601 Sobic010G106601 Sobic004G065800--Sobic010G106601 Sobic008G174500--Sobic003G042200 Sobic008G174500--Sobic003G062101 Sobic008G174500--Sobic001G194100 Sobic008G174500--Sobic006G184200 Sobic008G174500--Sobic010G009600 Sobic008G174500--Sobic009G156200 Sobic004G014100 Sobic004G014100 Sobic008G174500--Sobic004G014100 Sobic008G174500--Sobic010G223500 Sobic006G100266 Sobic006G100266 Sobic008G174500--Sobic006G100266 Sobic002G015800 Sobic002G015800 Sobic004G262100--Sobic002G015800 Sobic004G262100--Sobic003G092600 Sobic001G324800 Sobic001G324800 Sobic004G262100--Sobic001G324800 Sobic001G509100 Sobic001G509100 Sobic004G262100--Sobic001G509100 Sobic002G360900 Sobic002G360900 Sobic004G262100--Sobic002G360900 Sobic001G261529 Sobic001G261529 Sobic004G262100--Sobic001G261529 Sobic005G083280 Sobic005G083280 Sobic004G262100--Sobic005G083280 Sobic003G101200 Sobic003G101200 Sobic004G262100--Sobic003G101200 Sobic010G022600 Sobic010G022600 Sobic004G262100--Sobic010G022600 Sobic004G339900--Sobic002G420400 Sobic004G339900--Sobic004G071050 Sobic004G339900--Sobic001G485200 Sobic004G339900--Sobic001G194100 Sobic010G152000 Sobic010G152000 Sobic004G339900--Sobic010G152000 Sobic004G339900--Sobic007G041200 Sobic008G116100 Sobic008G116100 Sobic004G339900--Sobic008G116100 Sobic004G339900--Sobic004G065800 Sobic004G339900--Sobic004G163700 Sobic002G420400--Sobic004G339900 Sobic002G420400--Sobic004G071050 Sobic005G036200 Sobic005G036200 Sobic002G420400--Sobic005G036200 Sobic004G242200 Sobic004G242200 Sobic002G420400--Sobic004G242200 Sobic002G420400--Sobic001G485200 Sobic002G420400--Sobic003G379900 Sobic001G375800 Sobic001G375800 Sobic002G420400--Sobic001G375800 Sobic002G420400--Sobic010G152000 Sobic002G420400--Sobic001G194100 Sobic002G230400 Sobic002G230400 Sobic002G354800--Sobic002G230400 Sobic002G315100 Sobic002G315100 Sobic002G354800--Sobic002G315100 Sobic002G354800--Sobic006G184200 Sobic002G354800--Sobic002G349000 Sobic001G081800 Sobic001G081800 Sobic002G354800--Sobic001G081800 Sobic002G354800--Sobic004G014100 Sobic006G143300 Sobic006G143300 Sobic002G354800--Sobic006G143300 Sobic003G055200 Sobic003G055200 Sobic002G354800--Sobic003G055200 Sobic001G278700 Sobic001G278700 Sobic002G354800--Sobic001G278700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.