Gene annotation
| Transcriptome id | Sobic.007G041200.1 |
|---|---|
| Synonym | Sb07g003430 |
| Functional annotation | cytochrome P450, putative, expressed |
| UniProt | C5YGV3 |
| Pfam | PF00067 |
| Panther DB | PTHR24298 PTHR24298:SF45 |
| NCBI CDD | KOG0156; Cytochrome P450 CYP2 subfamily |
| KEGG Orthology | - |
| Gene Ontology | GO:0016705; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0005506iron ion binding |
Orthologs (automatic annotation)
| TAIR | AT1G64940 : cytochrome P450, family 87, subfamily A, polypeptide 6 |
|---|---|
| RAP-DB (Rice) | LOC_Os06g22340.1 : cytochrome P450, putative, expressed |
| MaizeGDB (Corn) | Zm00025a030127 |
| Brachypodium | - |
| Barley | HORVU4Hr1G081210.4 , HORVU4Hr1G081210.1 , HORVU4Hr1G081210.2 , HORVU0Hr1G019840.2 , HORVU0Hr1G019840.4 , HORVU7Hr1G025400.1 |
| Wheat | TraesCS2B02G057100 , TraesCS4B02G330500 , TraesCS5A02G502000 , TraesCS7D02G204900 , TraesCS7B02G108700 |
| Populus | - |
JBrowse
| Sobic.007G041200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G116100 | bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed | K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase |
| 2 | Sobic.009G033500 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 3 | Sobic.010G084800 | - | - |
| 4 | Sobic.010G047300 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 5 | Sobic.002G097601 | - | - |
| 6 | Sobic.006G186300 | fasciclin-like arabinogalactan protein, putative, expressed | - |
| 7 | Sobic.007G091200 | wax synthase isoform 1, putative, expressed | - |
| 8 | Sobic.008G109600 | oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed | - |
| 9 | Sobic.010G060100 | leucoanthocyanidin dioxygenase, putative, expressed | - |
| 10 | Sobic.001G425900 | EDM2, putative, expressed | - |
| 11 | Sobic.005G176875 | - | - |
| 12 | Sobic.007G205400 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 13 | Sobic.001G069100 | - | - |
| 14 | Sobic.010G118200 | phosphatidylinositol 3- and 4-kinase family protein, putative, expressed | - |
| 15 | Sobic.004G133600 | Sugar transporter(PubMedID : 27330561)@"ZmSWEET4c(Ortholog in maize:Sosso et al., 2015(PubMedID : 31659882)@Zhang et al., 2015)"(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 16 | Sobic.006G046300 | histidine kinase, putative, expressed | - |
| 17 | Sobic.004G163700 | "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed | K00700: GBE1, 1,4-alpha-glucan branching enzyme |
| 18 | Sobic.005G077900 | OsFBX411 - F-box domain containing protein, expressed | - |
| 19 | Sobic.003G214650 | - | - |
| 20 | Sobic.009G021400 | Jacalin-like lectin domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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