Gene annotation
| Transcriptome id | Sobic.006G046300.1 |
|---|---|
| Synonym | CKI1 |
| Functional annotation | histidine kinase, putative, expressed |
| UniProt | A0A1B6PK66 |
| Pfam | PF00072 PF02518 |
| Panther DB | PTHR24423 PTHR24423:SF514 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0000160; phosphorelay signal transduction system |
Orthologs (automatic annotation)
| TAIR | AT2G47430 : Signal transduction histidine kinase |
|---|---|
| RAP-DB (Rice) | LOC_Os06g08450.1 : histidine kinase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a016459 , Zm00025a016460 |
| Brachypodium | - |
| Barley | HORVU7Hr1G030040.2 , HORVU7Hr1G030040.3 |
| Wheat | TraesCS7B02G049400 , TraesCS5B02G533800 , TraesCS7D02G148100 , TraesCS7D02G148400 , TraesCS7B02G049100 , TraesCS4A02G340900 , TraesCS7A02G146600 |
| Populus | - |
JBrowse
| Sobic.006G046300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G161300 | vacuolar-processing enzyme precursor, putative, expressed | K01369: legumain |
| 2 | Sobic.010G047300 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 3 | Sobic.005G033600 | heavy-metal-associated domain-containing protein, putative, expressed | - |
| 4 | Sobic.005G176875 | - | - |
| 5 | Sobic.002G101200 | zinc finger, C3HC4 type domain containing protein, expressed | K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1 |
| 6 | Sobic.005G032500 | ASH-like SPRY domain containing protein, putative, expressed | K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2 |
| 7 | Sobic.002G015400 | OsFBD13 - F-box and FBD domain containing protein, expressed | - |
| 8 | Sobic.002G172200 | receptor-like protein kinase 5 precursor, putative, expressed | - |
| 9 | Sobic.001G425900 | EDM2, putative, expressed | - |
| 10 | Sobic.003G266100 | ESP4, putative, expressed | K06100: symplekin |
| 11 | Sobic.004G163700 | "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed | K00700: GBE1, 1,4-alpha-glucan branching enzyme |
| 12 | Sobic.008G159300 | KUN1 - Kunitz-type trypsin inhibitor precursor, expressed | - |
| 13 | Sobic.001G511400 | BES1/BZR1 homolog protein, putative, expressed | - |
| 14 | Sobic.008G109600 | oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed | - |
| 15 | Sobic.002G058900 | OsFBX237 - F-box domain containing protein, expressed | - |
| 16 | Sobic.007G041200 | cytochrome P450, putative, expressed | - |
| 17 | Sobic.006G015800 | "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed | - |
| 18 | Sobic.001G495700 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11251: histone H2A |
| 19 | Sobic.006G040101 | - | - |
| 20 | Sobic.009G139500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- | - |
Gene co-expression network
Octagon: transcription factors
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