Gene annotation
Transcriptome id Sobic.002G101200.1,Sobic.002G101200.2
Synonym VIM1, ORTH2, Sb02g008650
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1W0W354 , A0A1B6QAA2
Pfam PF15227 PF02182
Panther DB PTHR14140
NCBI CDD -
KEGG Orthology K10638; UHRF1, E3 ubiquitin-protein ligase UHRF1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G57820 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os05g01230.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038298 , Zm00025a045558 , Zm00025a045555 , Zm00025a045557 , Zm00025a041015
Brachypodium KQK08155 , KQJ91549
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G217000 expressed protein -
2 Sobic.005G032500 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
3 Sobic.002G058900 OsFBX237 - F-box domain containing protein, expressed -
4 Sobic.007G037200 expressed protein -
5 Sobic.002G166800 RNA recognition motif containing protein, putative, expressed -
6 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
7 Sobic.003G225800 AAA-type ATPase family protein, putative, expressed -
8 Sobic.006G031000 MYB family transcription factor, putative, expressed -
9 Sobic.009G051201 - -
10 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
11 Sobic.008G159300 KUN1 - Kunitz-type trypsin inhibitor precursor, expressed -
12 Sobic.005G197000 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
13 Sobic.009G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
14 Sobic.010G181900 expressed protein -
15 Sobic.008G031400 OsSub63 - Putative Subtilisin homologue, expressed -
16 Sobic.002G267700 bZIP family transcription factor, putative, expressed -
17 Sobic.003G213100 AAA-type ATPase family protein, putative, expressed -
18 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
19 Sobic.006G004100 no apical meristem protein, putative, expressed -
20 Sobic.004G220900 ethylene-insensitive protein 2, putative, expressed -


Gene co-expression network
sample Sobic002G101200 Sobic002G101200 Sobic002G217000 Sobic002G217000 Sobic002G101200--Sobic002G217000 Sobic005G032500 Sobic005G032500 Sobic002G101200--Sobic005G032500 Sobic002G058900 Sobic002G058900 Sobic002G101200--Sobic002G058900 Sobic007G037200 Sobic007G037200 Sobic002G101200--Sobic007G037200 Sobic002G166800 Sobic002G166800 Sobic002G101200--Sobic002G166800 Sobic002G100000 Sobic002G100000 Sobic002G101200--Sobic002G100000 Sobic003G225800 Sobic003G225800 Sobic002G101200--Sobic003G225800 Sobic006G031000 Sobic006G031000 Sobic002G101200--Sobic006G031000 Sobic009G051201 Sobic009G051201 Sobic002G101200--Sobic009G051201 Sobic002G217000--Sobic003G225800 Sobic002G217000--Sobic002G101200 Sobic005G197000 Sobic005G197000 Sobic002G217000--Sobic005G197000 Sobic002G217000--Sobic002G058900 Sobic002G217000--Sobic007G037200 Sobic005G089101 Sobic005G089101 Sobic002G217000--Sobic005G089101 Sobic002G217000--Sobic005G032500 Sobic002G217000--Sobic002G100000 Sobic006G004100 Sobic006G004100 Sobic002G217000--Sobic006G004100 Sobic005G032500--Sobic007G037200 Sobic005G032500--Sobic002G100000 Sobic008G031400 Sobic008G031400 Sobic005G032500--Sobic008G031400 Sobic005G032500--Sobic002G058900 Sobic008G159300 Sobic008G159300 Sobic005G032500--Sobic008G159300 Sobic005G032500--Sobic002G217000 Sobic004G220900 Sobic004G220900 Sobic005G032500--Sobic004G220900 Sobic005G032500--Sobic002G101200 Sobic004G212350 Sobic004G212350 Sobic005G032500--Sobic004G212350 Sobic002G058900--Sobic008G159300 Sobic002G058900--Sobic007G037200 Sobic002G058900--Sobic002G217000 Sobic002G058900--Sobic005G032500 Sobic002G015400 Sobic002G015400 Sobic002G058900--Sobic002G015400 Sobic002G058900--Sobic006G004100 Sobic002G058900--Sobic002G101200 Sobic003G266100 Sobic003G266100 Sobic002G058900--Sobic003G266100 Sobic002G059500 Sobic002G059500 Sobic002G058900--Sobic002G059500 Sobic007G037200--Sobic005G032500 Sobic007G037200--Sobic004G220900 Sobic007G037200--Sobic002G058900 Sobic007G037200--Sobic008G159300 Sobic007G037200--Sobic002G100000 Sobic007G037200--Sobic002G217000 Sobic007G037200--Sobic008G031400 Sobic003G106400 Sobic003G106400 Sobic007G037200--Sobic003G106400 Sobic007G037200--Sobic004G212350 Sobic002G166800--Sobic005G032500 Sobic002G166800--Sobic006G031000 Sobic002G166800--Sobic002G100000 Sobic002G166800--Sobic002G101200 Sobic002G166800--Sobic002G217000 Sobic002G166800--Sobic007G037200 Sobic002G166800--Sobic005G089101 Sobic010G181900 Sobic010G181900 Sobic002G166800--Sobic010G181900 Sobic001G392900 Sobic001G392900 Sobic002G166800--Sobic001G392900 Sobic002G100000--Sobic005G089101 Sobic002G100000--Sobic004G212350 Sobic002G100000--Sobic007G037200 Sobic002G100000--Sobic010G181900 Sobic002G100000--Sobic005G032500 Sobic002G100000--Sobic002G217000 Sobic008G168400 Sobic008G168400 Sobic002G100000--Sobic008G168400 Sobic002G100000--Sobic004G220900 Sobic007G187100 Sobic007G187100 Sobic002G100000--Sobic007G187100 Sobic003G225800--Sobic005G197000 Sobic003G213100 Sobic003G213100 Sobic003G225800--Sobic003G213100 Sobic003G225800--Sobic002G217000 Sobic003G225800--Sobic005G089101 Sobic003G225800--Sobic002G100000 Sobic003G225800--Sobic006G004100 Sobic003G225800--Sobic002G101200 Sobic003G307600 Sobic003G307600 Sobic003G225800--Sobic003G307600 Sobic003G225800--Sobic007G037200 Sobic006G031000--Sobic002G166800 Sobic010G010300 Sobic010G010300 Sobic006G031000--Sobic010G010300 Sobic006G117300 Sobic006G117300 Sobic006G031000--Sobic006G117300 Sobic006G031000--Sobic002G101200 Sobic002G267700 Sobic002G267700 Sobic006G031000--Sobic002G267700 Sobic009G139500 Sobic009G139500 Sobic006G031000--Sobic009G139500 Sobic006G031000--Sobic005G032500 Sobic006G031000--Sobic001G392900 Sobic002G053100 Sobic002G053100 Sobic006G031000--Sobic002G053100 Sobic009G051201--Sobic003G213100 Sobic009G051201--Sobic003G225800 Sobic009G051201--Sobic002G101200 Sobic009G051201--Sobic002G217000 Sobic009G051201--Sobic005G197000 Sobic002G069800 Sobic002G069800 Sobic009G051201--Sobic002G069800 Sobic005G003100 Sobic005G003100 Sobic009G051201--Sobic005G003100 Sobic007G209700 Sobic007G209700 Sobic009G051201--Sobic007G209700 Sobic009G013200 Sobic009G013200 Sobic009G051201--Sobic009G013200
Octagon: transcription factors


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