Gene annotation
Transcriptome id Sobic.003G225800.1
Synonym Sb03g028368
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1B6Q4V6
Pfam PF05496
Panther DB PTHR23074 PTHR23074:SF100
NCBI CDD KOG0737; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT1G64110 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g43480.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU1Hr1G092440.8 , HORVU1Hr1G092440.9 , HORVU1Hr1G092440.4 , HORVU1Hr1G092440.5 , HORVU1Hr1G092440.6 , HORVU1Hr1G092440.7 , HORVU1Hr1G092440.1 , HORVU1Hr1G092440.2 , HORVU1Hr1G092440.3 , HORVU1Hr1G092440.14 , HORVU1Hr1G092440.13 , HORVU1Hr1G092440.11 , HORVU1Hr1G092440.18 , HORVU1Hr1G092440.16 , HORVU1Hr1G092440.17 , HORVU1Hr1G092440.15 , HORVU1Hr1G092440.12 , HORVU1Hr1G092440.10
Wheat -
Populus -


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cDNA sequences
Sobic.003G225800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G197000 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
2 Sobic.003G213100 AAA-type ATPase family protein, putative, expressed -
3 Sobic.002G217000 expressed protein -
4 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
5 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
6 Sobic.006G004100 no apical meristem protein, putative, expressed -
7 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
8 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.007G037200 expressed protein -
10 Sobic.009G051201 - -
11 Sobic.002G058900 OsFBX237 - F-box domain containing protein, expressed -
12 Sobic.010G181900 expressed protein -
13 Sobic.004G220900 ethylene-insensitive protein 2, putative, expressed -
14 Sobic.005G032500 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
15 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
16 Sobic.003G291100 - -
17 Sobic.002G166800 RNA recognition motif containing protein, putative, expressed -
18 Sobic.007G054700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
19 Sobic.007G122932 - -
20 Sobic.002G408700 OsFBX259 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G225800 Sobic003G225800 Sobic005G197000 Sobic005G197000 Sobic003G225800--Sobic005G197000 Sobic003G213100 Sobic003G213100 Sobic003G225800--Sobic003G213100 Sobic002G217000 Sobic002G217000 Sobic003G225800--Sobic002G217000 Sobic005G089101 Sobic005G089101 Sobic003G225800--Sobic005G089101 Sobic002G100000 Sobic002G100000 Sobic003G225800--Sobic002G100000 Sobic006G004100 Sobic006G004100 Sobic003G225800--Sobic006G004100 Sobic002G101200 Sobic002G101200 Sobic003G225800--Sobic002G101200 Sobic003G307600 Sobic003G307600 Sobic003G225800--Sobic003G307600 Sobic007G037200 Sobic007G037200 Sobic003G225800--Sobic007G037200 Sobic005G197000--Sobic003G225800 Sobic005G197000--Sobic002G217000 Sobic005G197000--Sobic003G213100 Sobic005G197000--Sobic005G089101 Sobic005G197000--Sobic006G004100 Sobic005G197000--Sobic002G100000 Sobic004G220900 Sobic004G220900 Sobic005G197000--Sobic004G220900 Sobic002G058900 Sobic002G058900 Sobic005G197000--Sobic002G058900 Sobic005G197000--Sobic007G037200 Sobic003G213100--Sobic003G225800 Sobic003G213100--Sobic005G197000 Sobic003G213100--Sobic002G217000 Sobic009G051201 Sobic009G051201 Sobic003G213100--Sobic009G051201 Sobic002G069800 Sobic002G069800 Sobic003G213100--Sobic002G069800 Sobic003G213100--Sobic005G089101 Sobic005G003100 Sobic005G003100 Sobic003G213100--Sobic005G003100 Sobic009G013200 Sobic009G013200 Sobic003G213100--Sobic009G013200 Sobic003G213100--Sobic002G101200 Sobic002G217000--Sobic003G225800 Sobic002G217000--Sobic002G101200 Sobic002G217000--Sobic005G197000 Sobic002G217000--Sobic002G058900 Sobic002G217000--Sobic007G037200 Sobic002G217000--Sobic005G089101 Sobic005G032500 Sobic005G032500 Sobic002G217000--Sobic005G032500 Sobic002G217000--Sobic002G100000 Sobic002G217000--Sobic006G004100 Sobic005G089101--Sobic002G100000 Sobic005G089101--Sobic003G225800 Sobic010G181900 Sobic010G181900 Sobic005G089101--Sobic010G181900 Sobic005G089101--Sobic005G197000 Sobic005G089101--Sobic002G217000 Sobic005G089101--Sobic003G307600 Sobic005G001500 Sobic005G001500 Sobic005G089101--Sobic005G001500 Sobic005G089101--Sobic007G037200 Sobic004G212350 Sobic004G212350 Sobic005G089101--Sobic004G212350 Sobic002G100000--Sobic005G089101 Sobic002G100000--Sobic004G212350 Sobic002G100000--Sobic007G037200 Sobic002G100000--Sobic010G181900 Sobic002G100000--Sobic005G032500 Sobic002G100000--Sobic002G217000 Sobic008G168400 Sobic008G168400 Sobic002G100000--Sobic008G168400 Sobic002G100000--Sobic004G220900 Sobic007G187100 Sobic007G187100 Sobic002G100000--Sobic007G187100 Sobic006G004100--Sobic004G220900 Sobic003G266100 Sobic003G266100 Sobic006G004100--Sobic003G266100 Sobic002G059500 Sobic002G059500 Sobic006G004100--Sobic002G059500 Sobic006G004100--Sobic005G197000 Sobic006G004100--Sobic002G058900 Sobic006G004100--Sobic007G037200 Sobic006G004100--Sobic002G217000 Sobic008G159300 Sobic008G159300 Sobic006G004100--Sobic008G159300 Sobic006G040101 Sobic006G040101 Sobic006G004100--Sobic006G040101 Sobic002G101200--Sobic002G217000 Sobic002G101200--Sobic005G032500 Sobic002G101200--Sobic002G058900 Sobic002G101200--Sobic007G037200 Sobic002G166800 Sobic002G166800 Sobic002G101200--Sobic002G166800 Sobic002G101200--Sobic002G100000 Sobic002G101200--Sobic003G225800 Sobic006G031000 Sobic006G031000 Sobic002G101200--Sobic006G031000 Sobic002G101200--Sobic009G051201 Sobic003G307600--Sobic010G181900 Sobic003G307600--Sobic005G001500 Sobic003G307600--Sobic005G089101 Sobic003G307600--Sobic002G100000 Sobic003G227800 Sobic003G227800 Sobic003G307600--Sobic003G227800 Sobic003G063900 Sobic003G063900 Sobic003G307600--Sobic003G063900 Sobic002G408700 Sobic002G408700 Sobic003G307600--Sobic002G408700 Sobic003G307600--Sobic008G168400 Sobic009G021300 Sobic009G021300 Sobic003G307600--Sobic009G021300 Sobic007G037200--Sobic005G032500 Sobic007G037200--Sobic004G220900 Sobic007G037200--Sobic002G058900 Sobic007G037200--Sobic008G159300 Sobic007G037200--Sobic002G100000 Sobic007G037200--Sobic002G217000 Sobic008G031400 Sobic008G031400 Sobic007G037200--Sobic008G031400 Sobic003G106400 Sobic003G106400 Sobic007G037200--Sobic003G106400 Sobic007G037200--Sobic004G212350
Octagon: transcription factors


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