Gene annotation
Transcriptome id Sobic.001G495700.1
Synonym HTA11, Sb01g046310
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt A0A1B6QQC9
Pfam PF16211 PF00125
Panther DB PTHR23430
NCBI CDD KOG1757; Histone 2A
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G54560 : histone H2A 11
RAP-DB (Rice) LOC_Os03g53190.2 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000771
Brachypodium KQJ96739 , KQJ96738
Barley HORVU1Hr1G035130.3 , HORVU1Hr1G035130.2 , HORVU1Hr1G035130.1
Wheat TraesCS1A02G132400 , TraesCS1B02G154500 , TraesCS7D02G246600
Populus -


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cDNA sequences
Sobic.001G495700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G015500 OsFBD13 - F-box and FBD domain containing protein, expressed -
2 Sobic.010G133150 - -
3 Sobic.002G097100 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
4 Sobic.007G032500 WD domain, G-beta repeat domain containing protein, expressed K11462: polycomb protein EED
5 Sobic.005G174200 - -
6 Sobic.001G511400 BES1/BZR1 homolog protein, putative, expressed -
7 Sobic.002G015400 OsFBD13 - F-box and FBD domain containing protein, expressed -
8 Sobic.009G058300 expressed protein -
9 Sobic.007G199500 MBTB30 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.003G319050 - -
11 Sobic.003G211600 - -
12 Sobic.009G057100 - -
13 Sobic.005G147500 - -
14 Sobic.002G300900 - -
15 Sobic.004G071100 - -
16 Sobic.008G159300 KUN1 - Kunitz-type trypsin inhibitor precursor, expressed -
17 Sobic.002G172200 receptor-like protein kinase 5 precursor, putative, expressed -
18 Sobic.001G284700 - -
19 Sobic.001G374600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@desiccation-related protein PCC13-62 precursor, putative, expressed -
20 Sobic.001G269650 - -


Gene co-expression network
sample Sobic001G495700 Sobic001G495700 Sobic002G015500 Sobic002G015500 Sobic001G495700--Sobic002G015500 Sobic010G133150 Sobic010G133150 Sobic001G495700--Sobic010G133150 Sobic002G097100 Sobic002G097100 Sobic001G495700--Sobic002G097100 Sobic007G032500 Sobic007G032500 Sobic001G495700--Sobic007G032500 Sobic005G174200 Sobic005G174200 Sobic001G495700--Sobic005G174200 Sobic001G511400 Sobic001G511400 Sobic001G495700--Sobic001G511400 Sobic002G015400 Sobic002G015400 Sobic001G495700--Sobic002G015400 Sobic009G058300 Sobic009G058300 Sobic001G495700--Sobic009G058300 Sobic007G199500 Sobic007G199500 Sobic001G495700--Sobic007G199500 Sobic002G015500--Sobic002G097100 Sobic002G015500--Sobic001G495700 Sobic002G015500--Sobic010G133150 Sobic009G057100 Sobic009G057100 Sobic002G015500--Sobic009G057100 Sobic002G015500--Sobic007G032500 Sobic004G071100 Sobic004G071100 Sobic002G015500--Sobic004G071100 Sobic002G015500--Sobic001G511400 Sobic005G147500 Sobic005G147500 Sobic002G015500--Sobic005G147500 Sobic002G015500--Sobic009G058300 Sobic010G133150--Sobic001G495700 Sobic010G133150--Sobic002G097100 Sobic010G133150--Sobic002G015500 Sobic010G133150--Sobic007G032500 Sobic003G319050 Sobic003G319050 Sobic010G133150--Sobic003G319050 Sobic010G133150--Sobic005G174200 Sobic010G133150--Sobic009G057100 Sobic010G133150--Sobic001G511400 Sobic010G133150--Sobic007G199500 Sobic002G097100--Sobic002G015500 Sobic002G097100--Sobic003G319050 Sobic002G097100--Sobic001G495700 Sobic002G097100--Sobic010G133150 Sobic002G097100--Sobic009G057100 Sobic002G097100--Sobic007G199500 Sobic002G097100--Sobic004G071100 Sobic002G007300 Sobic002G007300 Sobic002G097100--Sobic002G007300 Sobic002G097100--Sobic005G147500 Sobic007G032500--Sobic005G174200 Sobic007G032500--Sobic009G058300 Sobic002G108300 Sobic002G108300 Sobic007G032500--Sobic002G108300 Sobic007G032500--Sobic001G495700 Sobic007G032500--Sobic002G015500 Sobic008G088900 Sobic008G088900 Sobic007G032500--Sobic008G088900 Sobic007G032500--Sobic002G015400 Sobic007G032500--Sobic010G133150 Sobic001G374600 Sobic001G374600 Sobic007G032500--Sobic001G374600 Sobic005G174200--Sobic007G032500 Sobic005G174200--Sobic001G374600 Sobic005G174200--Sobic002G108300 Sobic003G211600 Sobic003G211600 Sobic005G174200--Sobic003G211600 Sobic005G174200--Sobic001G495700 Sobic005G174200--Sobic009G058300 Sobic005G033600 Sobic005G033600 Sobic005G174200--Sobic005G033600 Sobic008G184100 Sobic008G184100 Sobic005G174200--Sobic008G184100 Sobic003G091500 Sobic003G091500 Sobic005G174200--Sobic003G091500 Sobic001G511400--Sobic002G015400 Sobic002G172200 Sobic002G172200 Sobic001G511400--Sobic002G172200 Sobic008G159300 Sobic008G159300 Sobic001G511400--Sobic008G159300 Sobic002G172100 Sobic002G172100 Sobic001G511400--Sobic002G172100 Sobic003G266100 Sobic003G266100 Sobic001G511400--Sobic003G266100 Sobic001G511400--Sobic005G147500 Sobic001G284700 Sobic001G284700 Sobic001G511400--Sobic001G284700 Sobic001G511400--Sobic009G058300 Sobic005G082300 Sobic005G082300 Sobic001G511400--Sobic005G082300 Sobic002G015400--Sobic008G159300 Sobic002G015400--Sobic001G511400 Sobic002G015400--Sobic003G266100 Sobic002G015400--Sobic002G172200 Sobic002G015400--Sobic002G172100 Sobic002G058900 Sobic002G058900 Sobic002G015400--Sobic002G058900 Sobic002G015400--Sobic009G058300 Sobic002G015400--Sobic001G495700 Sobic002G059500 Sobic002G059500 Sobic002G015400--Sobic002G059500 Sobic009G058300--Sobic002G108300 Sobic009G058300--Sobic001G284700 Sobic009G058300--Sobic002G172100 Sobic009G058300--Sobic005G147500 Sobic009G058300--Sobic007G032500 Sobic006G264800 Sobic006G264800 Sobic009G058300--Sobic006G264800 Sobic009G058300--Sobic008G088900 Sobic009G058300--Sobic001G511400 Sobic009G058300--Sobic002G015400 Sobic007G199500--Sobic002G097100 Sobic007G199500--Sobic003G319050 Sobic001G297700 Sobic001G297700 Sobic007G199500--Sobic001G297700 Sobic007G199500--Sobic002G015500 Sobic002G300900 Sobic002G300900 Sobic007G199500--Sobic002G300900 Sobic007G199500--Sobic001G495700 Sobic007G199500--Sobic004G071100 Sobic007G199500--Sobic009G057100 Sobic007G199500--Sobic002G007300
Octagon: transcription factors


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