Gene annotation
Transcriptome id Sobic.004G339900.1,Sobic.004G339900.2
Synonym
Functional annotation expressed protein
UniProt C5XV76 , A0A1Z5RR59
Pfam -
Panther DB PTHR13132 PTHR13132:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G28910 : -
RAP-DB (Rice) LOC_Os02g56500.4,LOC_Os02g56500.5 : expressed protein
MaizeGDB (Corn) -
Brachypodium PNT69416
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G339900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G420400 - -
2 Sobic.004G071050 - -
3 Sobic.001G485200 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
4 Sobic.001G194100 DEFL6 - Defensin and Defensin-like DEFL family, expressed -
5 Sobic.010G152000 powdery mildew resistant protein 5, putative, expressed -
6 Sobic.007G041200 cytochrome P450, putative, expressed -
7 Sobic.008G116100 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
8 Sobic.004G065800 - -
9 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
10 Sobic.003G379900 plus-3 domain containing protein, putative, expressed -
11 Sobic.001G425900 EDM2, putative, expressed -
12 Sobic.002G104300 FAS1, putative, expressed K10750: chromatin assembly factor 1 subunit A
13 Sobic.004G242200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nucleobase-ascorbate transporter, putative, expressed -
14 Sobic.003G062101 - -
15 Sobic.009G033500 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.003G239500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipase, putative, expressed -
17 Sobic.001G375800 expressed protein -
18 Sobic.005G036200 protein of unknown function containing protein, expressed -
19 Sobic.006G107900 uncharacterized Cys-rich domain containing protein, putative, expressed -
20 Sobic.010G195450 - -


Gene co-expression network
sample Sobic004G339900 Sobic004G339900 Sobic002G420400 Sobic002G420400 Sobic004G339900--Sobic002G420400 Sobic004G071050 Sobic004G071050 Sobic004G339900--Sobic004G071050 Sobic001G485200 Sobic001G485200 Sobic004G339900--Sobic001G485200 Sobic001G194100 Sobic001G194100 Sobic004G339900--Sobic001G194100 Sobic010G152000 Sobic010G152000 Sobic004G339900--Sobic010G152000 Sobic007G041200 Sobic007G041200 Sobic004G339900--Sobic007G041200 Sobic008G116100 Sobic008G116100 Sobic004G339900--Sobic008G116100 Sobic004G065800 Sobic004G065800 Sobic004G339900--Sobic004G065800 Sobic004G163700 Sobic004G163700 Sobic004G339900--Sobic004G163700 Sobic002G420400--Sobic004G339900 Sobic002G420400--Sobic004G071050 Sobic005G036200 Sobic005G036200 Sobic002G420400--Sobic005G036200 Sobic004G242200 Sobic004G242200 Sobic002G420400--Sobic004G242200 Sobic002G420400--Sobic001G485200 Sobic003G379900 Sobic003G379900 Sobic002G420400--Sobic003G379900 Sobic001G375800 Sobic001G375800 Sobic002G420400--Sobic001G375800 Sobic002G420400--Sobic010G152000 Sobic002G420400--Sobic001G194100 Sobic004G071050--Sobic001G485200 Sobic010G106601 Sobic010G106601 Sobic004G071050--Sobic010G106601 Sobic004G071050--Sobic002G420400 Sobic004G071050--Sobic004G339900 Sobic009G033500 Sobic009G033500 Sobic004G071050--Sobic009G033500 Sobic009G253800 Sobic009G253800 Sobic004G071050--Sobic009G253800 Sobic004G071050--Sobic004G065800 Sobic006G107900 Sobic006G107900 Sobic004G071050--Sobic006G107900 Sobic007G091200 Sobic007G091200 Sobic004G071050--Sobic007G091200 Sobic001G485200--Sobic006G107900 Sobic003G400400 Sobic003G400400 Sobic001G485200--Sobic003G400400 Sobic001G485200--Sobic004G071050 Sobic002G391100 Sobic002G391100 Sobic001G485200--Sobic002G391100 Sobic001G017500 Sobic001G017500 Sobic001G485200--Sobic001G017500 Sobic001G485200--Sobic004G339900 Sobic001G485200--Sobic010G106601 Sobic001G485200--Sobic002G420400 Sobic002G302300 Sobic002G302300 Sobic001G485200--Sobic002G302300 Sobic003G062101 Sobic003G062101 Sobic001G194100--Sobic003G062101 Sobic001G194100--Sobic004G163700 Sobic003G042200 Sobic003G042200 Sobic001G194100--Sobic003G042200 Sobic001G194100--Sobic004G065800 Sobic008G174500 Sobic008G174500 Sobic001G194100--Sobic008G174500 Sobic004G262100 Sobic004G262100 Sobic001G194100--Sobic004G262100 Sobic001G194100--Sobic004G339900 Sobic001G194100--Sobic002G420400 Sobic002G354800 Sobic002G354800 Sobic001G194100--Sobic002G354800 Sobic010G152000--Sobic004G339900 Sobic010G152000--Sobic002G420400 Sobic010G152000--Sobic004G071050 Sobic010G152000--Sobic005G036200 Sobic001G456400 Sobic001G456400 Sobic010G152000--Sobic001G456400 Sobic010G152000--Sobic004G242200 Sobic010G152000--Sobic001G485200 Sobic003G071901 Sobic003G071901 Sobic010G152000--Sobic003G071901 Sobic010G152000--Sobic004G065800 Sobic007G041200--Sobic008G116100 Sobic007G041200--Sobic009G033500 Sobic010G084800 Sobic010G084800 Sobic007G041200--Sobic010G084800 Sobic010G047300 Sobic010G047300 Sobic007G041200--Sobic010G047300 Sobic002G097601 Sobic002G097601 Sobic007G041200--Sobic002G097601 Sobic006G186300 Sobic006G186300 Sobic007G041200--Sobic006G186300 Sobic007G041200--Sobic007G091200 Sobic008G109600 Sobic008G109600 Sobic007G041200--Sobic008G109600 Sobic010G060100 Sobic010G060100 Sobic007G041200--Sobic010G060100 Sobic008G116100--Sobic007G041200 Sobic008G116100--Sobic009G033500 Sobic008G116100--Sobic010G084800 Sobic008G116100--Sobic002G097601 Sobic004G210000 Sobic004G210000 Sobic008G116100--Sobic004G210000 Sobic005G176875 Sobic005G176875 Sobic008G116100--Sobic005G176875 Sobic008G116100--Sobic004G339900 Sobic008G116100--Sobic006G186300 Sobic008G116100--Sobic010G047300 Sobic004G065800--Sobic001G194100 Sobic004G065800--Sobic004G071050 Sobic004G065800--Sobic004G339900 Sobic004G065800--Sobic003G062101 Sobic004G065800--Sobic009G033500 Sobic004G065800--Sobic002G420400 Sobic004G065800--Sobic007G041200 Sobic004G065800--Sobic001G485200 Sobic004G065800--Sobic010G106601 Sobic004G163700--Sobic001G194100 Sobic006G015800 Sobic006G015800 Sobic004G163700--Sobic006G015800 Sobic004G163700--Sobic004G262100 Sobic001G425900 Sobic001G425900 Sobic004G163700--Sobic001G425900 Sobic006G046300 Sobic006G046300 Sobic004G163700--Sobic006G046300 Sobic004G163700--Sobic007G041200 Sobic003G092600 Sobic003G092600 Sobic004G163700--Sobic003G092600 Sobic010G273800 Sobic010G273800 Sobic004G163700--Sobic010G273800 Sobic001G083900 Sobic001G083900 Sobic004G163700--Sobic001G083900
Octagon: transcription factors


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