Gene annotation
| Transcriptome id | Sobic.001G485200.2,Sobic.001G485200.1 |
|---|---|
| Synonym | Sb01g045420 |
| Functional annotation | AP2 domain containing protein, expressed |
| UniProt | A0A1B6QQ67 , A0A1Z5SB69 |
| Pfam | PF00847 |
| Panther DB | PTHR32467 PTHR32467:SF5 |
| NCBI CDD | - |
| KEGG Orthology | K09285; OVM, AP2-like factor, ANT lineage |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0007275multicellular organism development |
Orthologs (automatic annotation)
| TAIR | AT1G72570 : Integrase-type DNA-binding superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g07940.1 : AP2 domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a016203 , Zm00025a051698 , Zm00025a000885 , Zm00025a026413 |
| Brachypodium | PNT73386 , PNT77082 , PNT77083 , PNT77084 , KQK23352 , KQK23353 , KQK16904 |
| Barley | HORVU7Hr1G111060.6 , HORVU7Hr1G111060.7 , HORVU7Hr1G111060.4 , HORVU7Hr1G111060.8 , HORVU7Hr1G111060.9 , HORVU7Hr1G002730.1 , HORVU4Hr1G076200.5 , HORVU4Hr1G076200.4 , HORVU4Hr1G076200.7 , HORVU4Hr1G076200.6 , HORVU4Hr1G076200.1 , HORVU4Hr1G076200.3 , HORVU4Hr1G076200.2 |
| Wheat | TraesCS6B02G252000 , TraesCS7A02G495800 , TraesCS4B02G292900 , TraesCS7D02G483200 , TraesCS7D02G483200 , TraesCS3A02G395500 , TraesCS3B02G427300 , TraesCS4D02G291300 , TraesCS3D02G389100 , TraesCS4A02G011600 , TraesCS7B02G401400 |
| Populus | - |
JBrowse
| Sobic.001G485200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G107900 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 2 | Sobic.003G400400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine proteinase inhibitor precursor protein, putative, expressed | - |
| 3 | Sobic.004G071050 | - | - |
| 4 | Sobic.002G391100 | Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed | K11188: peroxiredoxin 6 |
| 5 | Sobic.001G017500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | - |
| 6 | Sobic.004G339900 | expressed protein | - |
| 7 | Sobic.010G106601 | - | K09422: transcription factor MYB, plant |
| 8 | Sobic.002G420400 | - | - |
| 9 | Sobic.002G302300 | cysteine proteinase A494 precursor, putative, expressed | K01373: cathepsin F |
| 10 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 11 | Sobic.006G143600 | similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 12 | Sobic.003G236200 | oleosin, putative, expressed | - |
| 13 | Sobic.003G363400 | bZIP transcription factor, putative, expressed | K14432: ABA responsive element binding factor |
| 14 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 15 | Sobic.002G118300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed | - |
| 16 | Sobic.003G098800 | osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | - |
| 17 | Sobic.009G250500 | expressed protein | - |
| 18 | Sobic.007G075250 | - | - |
| 19 | Sobic.010G131500 | -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed | - |
| 20 | Sobic.002G111400 | heavy metal-associated domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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