Gene annotation
| Transcriptome id | Sobic.010G131500.2,Sobic.010G131500.1 |
|---|---|
| Synonym | Sodium Proton Antiporter 4, ATNHX3, SbNHX4, NHX3, Sb10g012140 |
| Functional annotation | - (PubMedID : 29751546) transporter, monovalent cation:proton antiporter-2 family, putative, expressed |
| UniProt | A0A194YIU4 , A0A194YIU6 |
| Pfam | PF00999 |
| Panther DB | PTHR10110 PTHR10110:SF101 |
| NCBI CDD | KOG1965; Sodium/hydrogen exchanger protein |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane GO:0015299solute:proton antiporter activity GO:0006812cation transport GO:0009651response to salt stress GO:0006814sodium ion transport GO:0005886plasma membrane GO:0005774vacuolar membrane |
Orthologs (automatic annotation)
| TAIR | AT5G55470 : Na+/H+ (sodium hydrogen) exchanger 3 |
|---|---|
| RAP-DB (Rice) | LOC_Os06g21360.1 : transporter, monovalent cation:proton antiporter-2 family, putative, expressed |
| MaizeGDB (Corn) | Zm00025a050604 |
| Brachypodium | KQK18478 |
| Barley | HORVU7Hr1G046030.4 , HORVU2Hr1G021020.10 , HORVU7Hr1G046030.2 , HORVU7Hr1G046030.3 , HORVU7Hr1G046030.1 , HORVU2Hr1G021020.9 , HORVU2Hr1G021020.8 , HORVU2Hr1G021020.3 , HORVU2Hr1G021020.2 , HORVU2Hr1G021020.1 , HORVU2Hr1G021020.7 , HORVU2Hr1G021020.6 , HORVU2Hr1G021020.5 , HORVU2Hr1G021020.4 , HORVU2Hr1G021020.11 |
| Wheat | TraesCS7B02G191300 , TraesCS2A02G121000 , TraesCS7D02G226200 , TraesCS2B02G141900 , TraesCS2B02G141900 , TraesCS7A02G228400 , TraesCS2D02G123000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G437400 | The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 2 | Sobic.003G098800 | osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | - |
| 3 | Sobic.009G250500 | expressed protein | - |
| 4 | Sobic.003G051400 | cytochrome c oxidase polypeptide Vc, putative, expressed | - |
| 5 | Sobic.001G058800 | cysteine proteinase EP-B 1 precursor, putative, expressed | - |
| 6 | Sobic.001G380800 | cupin domain containing protein, expressed | - |
| 7 | Sobic.003G398200 | B3 DNA binding domain containing protein, expressed | - |
| 8 | Sobic.006G248100 | lipase, putative, expressed | - |
| 9 | Sobic.004G301800 | vacuolar-processing enzyme precursor, putative, expressed | K01369: legumain |
| 10 | Sobic.001G208500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed | K09873: aquaporin TIP |
| 11 | Sobic.002G393100 | dehydrogenase/reductase, putative, expressed | - |
| 12 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 13 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 14 | Sobic.006G143600 | similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 15 | Sobic.010G142900 | oleosin, putative, expressed | - |
| 16 | Sobic.010G269950 | - | - |
| 17 | Sobic.004G164800 | poly synthetase 3, putative, expressed | K10798: poly [ADP-ribose] polymerase 2/3/4 |
| 18 | Sobic.003G372600 | Up-reguralion under drought(PubMedID : 24916767)@expressed protein | - |
| 19 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 20 | Sobic.001G544400 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@oleosin, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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