Gene annotation
| Transcriptome id | Sobic.006G143600.1 |
|---|---|
| Synonym | Sb06g022280, ATPXG1, ATS1, CLO1 |
| Functional annotation | similar to OSIGBa0157K09-H0214G12.13 protein (PubMedID : 29862293) caleosin related protein, putative, expressed |
| UniProt | C5YBZ6 |
| Pfam | PF05042 |
| Panther DB | PTHR31495 PTHR31495:SF0 |
| NCBI CDD | - |
| KEGG Orthology | K17991; peroxygenase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G26740 : seed gene 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g43170.1 : caleosin related protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a056486 |
| Brachypodium | - |
| Barley | HORVU2Hr1G088760.4 , HORVU2Hr1G088760.1 , HORVU2Hr1G088540.1 |
| Wheat | TraesCS2A02G367200 , TraesCS2A02G385600 , TraesCS2D02G364100 , TraesCS2B02G384600 |
| Populus | - |
JBrowse
| Sobic.006G143600 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 2 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 3 | Sobic.001G058800 | cysteine proteinase EP-B 1 precursor, putative, expressed | - |
| 4 | Sobic.010G269950 | - | - |
| 5 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 6 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 7 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 8 | Sobic.010G142900 | oleosin, putative, expressed | - |
| 9 | Sobic.003G437400 | The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 10 | Sobic.003G098800 | osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | - |
| 11 | Sobic.001G380800 | cupin domain containing protein, expressed | - |
| 12 | Sobic.003G051400 | cytochrome c oxidase polypeptide Vc, putative, expressed | - |
| 13 | Sobic.010G131500 | -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed | - |
| 14 | Sobic.002G401400 | glyoxalase family protein, putative, expressed | - |
| 15 | Sobic.009G250500 | expressed protein | - |
| 16 | Sobic.004G301800 | vacuolar-processing enzyme precursor, putative, expressed | K01369: legumain |
| 17 | Sobic.002G391100 | Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed | K11188: peroxiredoxin 6 |
| 18 | Sobic.001G418500 | glyoxalase family protein, putative, expressed | - |
| 19 | Sobic.002G185100 | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed | K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| 20 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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