Gene annotation
| Transcriptome id | Sobic.007G162700.1 |
|---|---|
| Synonym | SbERF84, Sb07g023575, dehydration response element binding (DREB) transcription factor, (SbDREB2);ethylene response factor 84 |
| Functional annotation | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. " (PubMedID : 24086146) Not investigated (PubMedID : 23766026) AP2 domain containing protein, expressed |
| UniProt | A0A1Z5RA70 |
| Pfam | PF00847 |
| Panther DB | PTHR31241 PTHR31241:SF8 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity |
Orthologs (automatic annotation)
| TAIR | AT5G18450 : Integrase-type DNA-binding superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g45110.1 : AP2 domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a000875 , Zm00025a043959 , Zm00025a030489 , Zm00025a005513 |
| Brachypodium | KQJ94703 , KQK23365 , PNT78049 |
| Barley | HORVU1Hr1G063100.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.007G162700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G143600 | similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 2 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 3 | Sobic.002G185100 | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed | K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| 4 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 5 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 6 | Sobic.010G269950 | - | - |
| 7 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 8 | Sobic.002G391100 | Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed | K11188: peroxiredoxin 6 |
| 9 | Sobic.003G098800 | osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | - |
| 10 | Sobic.010G142900 | oleosin, putative, expressed | - |
| 11 | Sobic.001G017500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | - |
| 12 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 13 | Sobic.003G437400 | The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 14 | Sobic.001G380800 | cupin domain containing protein, expressed | - |
| 15 | Sobic.003G051400 | cytochrome c oxidase polypeptide Vc, putative, expressed | - |
| 16 | Sobic.001G418500 | glyoxalase family protein, putative, expressed | - |
| 17 | Sobic.002G401400 | glyoxalase family protein, putative, expressed | - |
| 18 | Sobic.010G131500 | -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed | - |
| 19 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
| 20 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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