Gene annotation
| Transcriptome id | Sobic.002G185100.2 |
|---|---|
| Synonym | SDH2-3, Sb02g023310 |
| Functional annotation | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed |
| UniProt | A0A1W0W4Z5 |
| Pfam | PF13534 PF13085 |
| Panther DB | PTHR11921 PTHR11921:SF23 |
| NCBI CDD | KOG3049; Succinate dehydrogenase, Fe-S protein subunit |
| KEGG Orthology | K00235; SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| Gene Ontology | GO:0009055; electron transfer activity |
Orthologs (automatic annotation)
| TAIR | AT5G65165 : succinate dehydrogenase 2-3 |
|---|---|
| RAP-DB (Rice) | LOC_Os09g20440.1 : succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed |
| MaizeGDB (Corn) | Zm00025a013821 |
| Brachypodium | KQJ90034 |
| Barley | HORVU5Hr1G058190.1 , HORVU5Hr1G058190.2 , HORVU5Hr1G058190.3 , HORVU5Hr1G058190.4 |
| Wheat | TraesCS5A02G189800 , TraesCS5A02G189800 , TraesCS5D02G201100 , TraesCS5B02G193400 , TraesCS5B02G193400 |
| Populus | - |
JBrowse
| Sobic.002G185100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 2 | Sobic.001G497700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 3 | Sobic.009G104600 | small hydrophilic plant seed protein, putative, expressed | - |
| 4 | Sobic.010G007800 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant group 1, putative, expressed | - |
| 5 | Sobic.006G143600 | similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 6 | Sobic.009G104500 | small hydrophilic plant seed protein, putative, expressed | - |
| 7 | Sobic.010G269950 | - | - |
| 8 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 9 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 10 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 11 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 12 | Sobic.002G401400 | glyoxalase family protein, putative, expressed | - |
| 13 | Sobic.007G218500 | (50.9% identity with SbCCoAOMT/68.5% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed | K18883: tricin synthase |
| 14 | Sobic.010G142900 | oleosin, putative, expressed | - |
| 15 | Sobic.003G051400 | cytochrome c oxidase polypeptide Vc, putative, expressed | - |
| 16 | Sobic.010G041900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dehydrin, putative, expressed | - |
| 17 | Sobic.001G418500 | glyoxalase family protein, putative, expressed | - |
| 18 | Sobic.006G248100 | lipase, putative, expressed | - |
| 19 | Sobic.004G091600 | ethylene receptor, putative, expressed | K14509: ETR, ethylene receptor |
| 20 | Sobic.003G395000 | cysteine proteinase EP-B 1 precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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