Gene annotation
Transcriptome id Sobic.003G395000.1
Synonym Sb03g043220
Functional annotation cysteine proteinase EP-B 1 precursor, putative, expressed
UniProt C5XFI4
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF346
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G50260 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os01g67980.1 : cysteine proteinase EP-B 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a039415 , Zm00025a002948 , Zm00025a026361 , Zm00025a041836
Brachypodium KQK03509 , KQK11105
Barley HORVU3Hr1G091920.1 , HORVU3Hr1G091920.2 , HORVU3Hr1G088080.1 , HORVU3Hr1G088080.2 , HORVU3Hr1G091790.1 , HORVU3Hr1G091800.1
Wheat TraesCS3D02G342100 , TraesCS5B02G138300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G401400 glyoxalase family protein, putative, expressed -
2 Sobic.008G159000 - -
3 Sobic.009G037100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -
4 Sobic.003G144500 Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
5 Sobic.004G164800 poly synthetase 3, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
6 Sobic.002G393100 dehydrogenase/reductase, putative, expressed -
7 Sobic.001G208500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
8 Sobic.001G418500 glyoxalase family protein, putative, expressed -
9 Sobic.006G248100 lipase, putative, expressed -
10 Sobic.006G055900 expressed protein -
11 Sobic.001G380800 cupin domain containing protein, expressed -
12 Sobic.010G142900 oleosin, putative, expressed -
13 Sobic.002G197700 -(PubMedID : 23108465)@ZOS4-05 - C2H2 zinc finger protein, expressed -
14 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
15 Sobic.001G126900 oleosin, putative, expressed -
16 Sobic.002G211300 aminotransferase, classes I and II, domain containing protein, expressed K00814: GPT, alanine transaminase
17 Sobic.003G051400 cytochrome c oxidase polypeptide Vc, putative, expressed -
18 Sobic.010G269950 - -
19 Sobic.007G218500 (50.9% identity with SbCCoAOMT/68.5% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
20 Sobic.004G301800 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain


Gene co-expression network
sample Sobic003G395000 Sobic003G395000 Sobic002G401400 Sobic002G401400 Sobic003G395000--Sobic002G401400 Sobic008G159000 Sobic008G159000 Sobic003G395000--Sobic008G159000 Sobic009G037100 Sobic009G037100 Sobic003G395000--Sobic009G037100 Sobic003G144500 Sobic003G144500 Sobic003G395000--Sobic003G144500 Sobic004G164800 Sobic004G164800 Sobic003G395000--Sobic004G164800 Sobic002G393100 Sobic002G393100 Sobic003G395000--Sobic002G393100 Sobic001G208500 Sobic001G208500 Sobic003G395000--Sobic001G208500 Sobic001G418500 Sobic001G418500 Sobic003G395000--Sobic001G418500 Sobic006G248100 Sobic006G248100 Sobic003G395000--Sobic006G248100 Sobic002G401400--Sobic001G418500 Sobic002G401400--Sobic003G144500 Sobic001G126900 Sobic001G126900 Sobic002G401400--Sobic001G126900 Sobic010G142900 Sobic010G142900 Sobic002G401400--Sobic010G142900 Sobic001G380800 Sobic001G380800 Sobic002G401400--Sobic001G380800 Sobic002G401400--Sobic009G037100 Sobic002G401400--Sobic004G164800 Sobic002G401400--Sobic003G395000 Sobic002G401400--Sobic002G393100 Sobic002G197700 Sobic002G197700 Sobic008G159000--Sobic002G197700 Sobic008G159000--Sobic004G164800 Sobic002G211300 Sobic002G211300 Sobic008G159000--Sobic002G211300 Sobic008G159000--Sobic001G208500 Sobic003G372600 Sobic003G372600 Sobic008G159000--Sobic003G372600 Sobic008G159000--Sobic009G037100 Sobic010G125000 Sobic010G125000 Sobic008G159000--Sobic010G125000 Sobic008G159000--Sobic002G393100 Sobic002G184700 Sobic002G184700 Sobic008G159000--Sobic002G184700 Sobic009G037100--Sobic004G164800 Sobic009G037100--Sobic003G372600 Sobic009G037100--Sobic008G159000 Sobic009G037100--Sobic001G208500 Sobic009G037100--Sobic002G211300 Sobic009G037100--Sobic002G393100 Sobic009G037100--Sobic010G125000 Sobic005G165700 Sobic005G165700 Sobic009G037100--Sobic005G165700 Sobic009G037100--Sobic002G197700 Sobic003G144500--Sobic002G401400 Sobic003G144500--Sobic001G126900 Sobic003G144500--Sobic001G418500 Sobic003G144500--Sobic010G142900 Sobic003G144500--Sobic009G037100 Sobic003G144500--Sobic001G380800 Sobic010G269950 Sobic010G269950 Sobic003G144500--Sobic010G269950 Sobic003G144500--Sobic004G164800 Sobic003G144500--Sobic003G395000 Sobic004G164800--Sobic009G037100 Sobic004G164800--Sobic002G393100 Sobic004G164800--Sobic001G208500 Sobic004G164800--Sobic003G372600 Sobic004G164800--Sobic002G211300 Sobic004G164800--Sobic008G159000 Sobic004G164800--Sobic002G197700 Sobic004G164800--Sobic010G125000 Sobic004G164800--Sobic006G248100 Sobic002G393100--Sobic001G208500 Sobic002G393100--Sobic004G164800 Sobic002G393100--Sobic002G197700 Sobic002G393100--Sobic003G372600 Sobic002G393100--Sobic009G037100 Sobic002G393100--Sobic008G159000 Sobic002G393100--Sobic006G248100 Sobic002G393100--Sobic002G211300 Sobic002G393100--Sobic001G380800 Sobic001G208500--Sobic003G372600 Sobic001G208500--Sobic002G393100 Sobic001G208500--Sobic004G164800 Sobic001G208500--Sobic002G211300 Sobic001G208500--Sobic008G159000 Sobic001G208500--Sobic002G184700 Sobic001G208500--Sobic009G037100 Sobic001G208500--Sobic006G248100 Sobic001G208500--Sobic002G197700 Sobic001G418500--Sobic010G142900 Sobic001G418500--Sobic002G401400 Sobic001G418500--Sobic001G380800 Sobic004G301800 Sobic004G301800 Sobic001G418500--Sobic004G301800 Sobic001G418500--Sobic001G126900 Sobic003G295600 Sobic003G295600 Sobic001G418500--Sobic003G295600 Sobic001G418500--Sobic003G144500 Sobic001G544400 Sobic001G544400 Sobic001G418500--Sobic001G544400 Sobic003G399500 Sobic003G399500 Sobic001G418500--Sobic003G399500 Sobic006G248100--Sobic001G208500 Sobic006G248100--Sobic002G393100 Sobic003G051400 Sobic003G051400 Sobic006G248100--Sobic003G051400 Sobic006G248100--Sobic003G372600 Sobic006G248100--Sobic004G164800 Sobic006G248100--Sobic008G159000 Sobic006G248100--Sobic009G037100 Sobic006G248100--Sobic002G401400 Sobic006G248100--Sobic002G184700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.