Gene annotation
| Transcriptome id | Sobic.001G380800.1,Sobic.001G380800.2 |
|---|---|
| Synonym | Sb01g036140 |
| Functional annotation | cupin domain containing protein, expressed |
| UniProt | C5X0T3 |
| Pfam | PF00190 |
| Panther DB | PTHR31189 PTHR31189:SF2 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G28490 : RmlC-like cupins superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g21790.1 : cupin domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a002350 |
| Brachypodium | KQK21799 |
| Barley | HORVU4Hr1G050210.6 , HORVU4Hr1G050210.4 , HORVU4Hr1G050210.2 , HORVU4Hr1G050210.1 , HORVU4Hr1G050210.5 |
| Wheat | TraesCS4D02G171800 , TraesCS4A02G135500 , TraesCS4B02G169700 |
| Populus | - |
JBrowse
| Sobic.001G380800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G301800 | vacuolar-processing enzyme precursor, putative, expressed | K01369: legumain |
| 2 | Sobic.010G142900 | oleosin, putative, expressed | - |
| 3 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 4 | Sobic.001G418500 | glyoxalase family protein, putative, expressed | - |
| 5 | Sobic.003G437400 | The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 6 | Sobic.002G401400 | glyoxalase family protein, putative, expressed | - |
| 7 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 8 | Sobic.002G393100 | dehydrogenase/reductase, putative, expressed | - |
| 9 | Sobic.003G098800 | osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | - |
| 10 | Sobic.003G051400 | cytochrome c oxidase polypeptide Vc, putative, expressed | - |
| 11 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 12 | Sobic.001G544400 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@oleosin, putative, expressed | - |
| 13 | Sobic.004G164800 | poly synthetase 3, putative, expressed | K10798: poly [ADP-ribose] polymerase 2/3/4 |
| 14 | Sobic.001G058800 | cysteine proteinase EP-B 1 precursor, putative, expressed | - |
| 15 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 16 | Sobic.006G248100 | lipase, putative, expressed | - |
| 17 | Sobic.009G037100 | oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed | - |
| 18 | Sobic.010G131500 | -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed | - |
| 19 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
| 20 | Sobic.001G208500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed | K09873: aquaporin TIP |
Gene co-expression network
Octagon: transcription factors
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