Gene annotation
Transcriptome id Sobic.001G058800.1
Synonym Sb01g005350
Functional annotation cysteine proteinase EP-B 1 precursor, putative, expressed
UniProt C5WX88
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF346
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G50260 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os01g67980.1 : cysteine proteinase EP-B 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a039049 , Zm00025a039415 , Zm00025a026361 , Zm00025a016788
Brachypodium KQK03509 , KQJ90836
Barley HORVU3Hr1G091920.1 , HORVU3Hr1G091920.2 , HORVU5Hr1G074780.3 , HORVU5Hr1G074780.2 , HORVU5Hr1G074780.1 , HORVU3Hr1G091790.1 , HORVU3Hr1G091800.1 , HORVU2Hr1G121150.1
Wheat TraesCS5B02G274600 , TraesCS5D02G282500 , TraesCS3D02G342100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G165700 AMBP1 - Antimicrobial peptide MBP-1 family protein precursor, expressed -
2 Sobic.003G437400 The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.001G380800 cupin domain containing protein, expressed -
4 Sobic.009G037100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -
5 Sobic.010G131500 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
6 Sobic.004G164800 poly synthetase 3, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
7 Sobic.003G051400 cytochrome c oxidase polypeptide Vc, putative, expressed -
8 Sobic.001G208500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
9 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
10 Sobic.002G393100 dehydrogenase/reductase, putative, expressed -
11 Sobic.006G248100 lipase, putative, expressed -
12 Sobic.001G498900 expressed protein -
13 Sobic.003G398200 B3 DNA binding domain containing protein, expressed -
14 Sobic.006G143600 similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed K17991: peroxygenase
15 Sobic.001G126900 oleosin, putative, expressed -
16 Sobic.003G144500 Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
17 Sobic.002G401400 glyoxalase family protein, putative, expressed -
18 Sobic.004G301800 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
19 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -
20 Sobic.006G248000 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase


Gene co-expression network
sample Sobic001G058800 Sobic001G058800 Sobic005G165700 Sobic005G165700 Sobic001G058800--Sobic005G165700 Sobic003G437400 Sobic003G437400 Sobic001G058800--Sobic003G437400 Sobic001G380800 Sobic001G380800 Sobic001G058800--Sobic001G380800 Sobic009G037100 Sobic009G037100 Sobic001G058800--Sobic009G037100 Sobic010G131500 Sobic010G131500 Sobic001G058800--Sobic010G131500 Sobic004G164800 Sobic004G164800 Sobic001G058800--Sobic004G164800 Sobic003G051400 Sobic003G051400 Sobic001G058800--Sobic003G051400 Sobic001G208500 Sobic001G208500 Sobic001G058800--Sobic001G208500 Sobic003G372600 Sobic003G372600 Sobic001G058800--Sobic003G372600 Sobic001G498900 Sobic001G498900 Sobic005G165700--Sobic001G498900 Sobic005G165700--Sobic009G037100 Sobic005G165700--Sobic001G058800 Sobic002G046000 Sobic002G046000 Sobic005G165700--Sobic002G046000 Sobic005G165700--Sobic004G164800 Sobic006G248000 Sobic006G248000 Sobic005G165700--Sobic006G248000 Sobic005G165700--Sobic003G372600 Sobic003G144500 Sobic003G144500 Sobic005G165700--Sobic003G144500 Sobic010G198900 Sobic010G198900 Sobic005G165700--Sobic010G198900 Sobic003G437400--Sobic010G131500 Sobic003G098800 Sobic003G098800 Sobic003G437400--Sobic003G098800 Sobic003G437400--Sobic003G051400 Sobic003G437400--Sobic001G380800 Sobic004G301800 Sobic004G301800 Sobic003G437400--Sobic004G301800 Sobic003G437400--Sobic001G058800 Sobic006G248100 Sobic006G248100 Sobic003G437400--Sobic006G248100 Sobic003G295600 Sobic003G295600 Sobic003G437400--Sobic003G295600 Sobic002G393100 Sobic002G393100 Sobic003G437400--Sobic002G393100 Sobic001G380800--Sobic004G301800 Sobic010G142900 Sobic010G142900 Sobic001G380800--Sobic010G142900 Sobic001G380800--Sobic003G295600 Sobic001G418500 Sobic001G418500 Sobic001G380800--Sobic001G418500 Sobic001G380800--Sobic003G437400 Sobic002G401400 Sobic002G401400 Sobic001G380800--Sobic002G401400 Sobic001G126900 Sobic001G126900 Sobic001G380800--Sobic001G126900 Sobic001G380800--Sobic002G393100 Sobic001G380800--Sobic003G098800 Sobic009G037100--Sobic004G164800 Sobic009G037100--Sobic003G372600 Sobic008G159000 Sobic008G159000 Sobic009G037100--Sobic008G159000 Sobic009G037100--Sobic001G208500 Sobic002G211300 Sobic002G211300 Sobic009G037100--Sobic002G211300 Sobic009G037100--Sobic002G393100 Sobic010G125000 Sobic010G125000 Sobic009G037100--Sobic010G125000 Sobic009G037100--Sobic005G165700 Sobic002G197700 Sobic002G197700 Sobic009G037100--Sobic002G197700 Sobic010G131500--Sobic003G437400 Sobic010G131500--Sobic003G098800 Sobic009G250500 Sobic009G250500 Sobic010G131500--Sobic009G250500 Sobic010G131500--Sobic003G051400 Sobic010G131500--Sobic001G058800 Sobic010G131500--Sobic001G380800 Sobic003G398200 Sobic003G398200 Sobic010G131500--Sobic003G398200 Sobic010G131500--Sobic006G248100 Sobic010G131500--Sobic004G301800 Sobic004G164800--Sobic009G037100 Sobic004G164800--Sobic002G393100 Sobic004G164800--Sobic001G208500 Sobic004G164800--Sobic003G372600 Sobic004G164800--Sobic002G211300 Sobic004G164800--Sobic008G159000 Sobic004G164800--Sobic002G197700 Sobic004G164800--Sobic010G125000 Sobic004G164800--Sobic006G248100 Sobic003G051400--Sobic003G437400 Sobic010G269950 Sobic010G269950 Sobic003G051400--Sobic010G269950 Sobic003G051400--Sobic010G131500 Sobic003G051400--Sobic001G380800 Sobic003G051400--Sobic006G248100 Sobic003G051400--Sobic002G393100 Sobic003G051400--Sobic001G208500 Sobic003G051400--Sobic003G098800 Sobic003G051400--Sobic001G058800 Sobic001G208500--Sobic003G372600 Sobic001G208500--Sobic002G393100 Sobic001G208500--Sobic004G164800 Sobic001G208500--Sobic002G211300 Sobic001G208500--Sobic008G159000 Sobic002G184700 Sobic002G184700 Sobic001G208500--Sobic002G184700 Sobic001G208500--Sobic009G037100 Sobic001G208500--Sobic006G248100 Sobic001G208500--Sobic002G197700 Sobic003G372600--Sobic001G208500 Sobic003G372600--Sobic002G211300 Sobic003G372600--Sobic002G184700 Sobic003G372600--Sobic006G248000 Sobic003G372600--Sobic004G164800 Sobic003G372600--Sobic002G046000 Sobic003G372600--Sobic010G125000 Sobic006G167700 Sobic006G167700 Sobic003G372600--Sobic006G167700 Sobic003G372600--Sobic009G037100
Octagon: transcription factors


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