Gene annotation
Transcriptome id Sobic.001G208500.1
Synonym Sb01g018430, BETA-TIP
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
aquaporin protein, putative, expressed
UniProt C5WXD0
Pfam PF00230
Panther DB PTHR19139 PTHR19139:SF132
NCBI CDD KOG0223; Aquaporin (major intrinsic protein family)
KEGG Orthology K09873; aquaporin TIP
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT1G17810 : beta-tonoplast intrinsic protein
RAP-DB (Rice) LOC_Os10g35050.1 : aquaporin protein, putative, expressed
MaizeGDB (Corn) Zm00025a053541 , Zm00025a017530 , Zm00025a006496
Brachypodium KQJ97261
Barley HORVU1Hr1G043890.3 , HORVU1Hr1G043890.2 , HORVU1Hr1G043890.5 , HORVU1Hr1G043890.4 , HORVU1Hr1G043890.1
Wheat TraesCS1B02G182200 , TraesCS3B02G608500 , TraesCS1A02G165400 , TraesCS1D02G175200
Populus -


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cDNA sequences
Sobic.001G208500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
2 Sobic.002G393100 dehydrogenase/reductase, putative, expressed -
3 Sobic.004G164800 poly synthetase 3, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
4 Sobic.002G211300 aminotransferase, classes I and II, domain containing protein, expressed K00814: GPT, alanine transaminase
5 Sobic.008G159000 - -
6 Sobic.002G184700 expressed protein -
7 Sobic.009G037100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -
8 Sobic.006G248100 lipase, putative, expressed -
9 Sobic.002G197700 -(PubMedID : 23108465)@ZOS4-05 - C2H2 zinc finger protein, expressed -
10 Sobic.006G167700 oleosin, putative, expressed -
11 Sobic.002G046000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
12 Sobic.010G125000 steroid nuclear receptor, ligand-binding, putative, expressed -
13 Sobic.006G248000 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
14 Sobic.001G344300 - -
15 Sobic.001G166900 B3 DNA binding domain containing protein, expressed -
16 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
17 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -
18 Sobic.001G534200 - -
19 Sobic.003G051400 cytochrome c oxidase polypeptide Vc, putative, expressed -
20 Sobic.001G165600 THION1 - Plant thionin family protein precursor, putative, expressed -


Gene co-expression network
sample Sobic001G208500 Sobic001G208500 Sobic003G372600 Sobic003G372600 Sobic001G208500--Sobic003G372600 Sobic002G393100 Sobic002G393100 Sobic001G208500--Sobic002G393100 Sobic004G164800 Sobic004G164800 Sobic001G208500--Sobic004G164800 Sobic002G211300 Sobic002G211300 Sobic001G208500--Sobic002G211300 Sobic008G159000 Sobic008G159000 Sobic001G208500--Sobic008G159000 Sobic002G184700 Sobic002G184700 Sobic001G208500--Sobic002G184700 Sobic009G037100 Sobic009G037100 Sobic001G208500--Sobic009G037100 Sobic006G248100 Sobic006G248100 Sobic001G208500--Sobic006G248100 Sobic002G197700 Sobic002G197700 Sobic001G208500--Sobic002G197700 Sobic003G372600--Sobic001G208500 Sobic003G372600--Sobic002G211300 Sobic003G372600--Sobic002G184700 Sobic006G248000 Sobic006G248000 Sobic003G372600--Sobic006G248000 Sobic003G372600--Sobic004G164800 Sobic002G046000 Sobic002G046000 Sobic003G372600--Sobic002G046000 Sobic010G125000 Sobic010G125000 Sobic003G372600--Sobic010G125000 Sobic006G167700 Sobic006G167700 Sobic003G372600--Sobic006G167700 Sobic003G372600--Sobic009G037100 Sobic002G393100--Sobic001G208500 Sobic002G393100--Sobic004G164800 Sobic002G393100--Sobic002G197700 Sobic002G393100--Sobic003G372600 Sobic002G393100--Sobic009G037100 Sobic002G393100--Sobic008G159000 Sobic002G393100--Sobic006G248100 Sobic002G393100--Sobic002G211300 Sobic001G380800 Sobic001G380800 Sobic002G393100--Sobic001G380800 Sobic004G164800--Sobic009G037100 Sobic004G164800--Sobic002G393100 Sobic004G164800--Sobic001G208500 Sobic004G164800--Sobic003G372600 Sobic004G164800--Sobic002G211300 Sobic004G164800--Sobic008G159000 Sobic004G164800--Sobic002G197700 Sobic004G164800--Sobic010G125000 Sobic004G164800--Sobic006G248100 Sobic002G211300--Sobic010G125000 Sobic002G211300--Sobic003G372600 Sobic002G211300--Sobic006G248000 Sobic002G211300--Sobic006G167700 Sobic002G211300--Sobic001G208500 Sobic001G165600 Sobic001G165600 Sobic002G211300--Sobic001G165600 Sobic002G211300--Sobic002G197700 Sobic002G211300--Sobic004G164800 Sobic002G211300--Sobic008G159000 Sobic008G159000--Sobic002G197700 Sobic008G159000--Sobic004G164800 Sobic008G159000--Sobic002G211300 Sobic008G159000--Sobic001G208500 Sobic008G159000--Sobic003G372600 Sobic008G159000--Sobic009G037100 Sobic008G159000--Sobic010G125000 Sobic008G159000--Sobic002G393100 Sobic008G159000--Sobic002G184700 Sobic009G103800 Sobic009G103800 Sobic002G184700--Sobic009G103800 Sobic002G184700--Sobic006G167700 Sobic001G344300 Sobic001G344300 Sobic002G184700--Sobic001G344300 Sobic002G184700--Sobic002G046000 Sobic002G184700--Sobic003G372600 Sobic001G166900 Sobic001G166900 Sobic002G184700--Sobic001G166900 Sobic002G184700--Sobic002G211300 Sobic002G184700--Sobic001G208500 Sobic004G349550 Sobic004G349550 Sobic002G184700--Sobic004G349550 Sobic009G037100--Sobic004G164800 Sobic009G037100--Sobic003G372600 Sobic009G037100--Sobic008G159000 Sobic009G037100--Sobic001G208500 Sobic009G037100--Sobic002G211300 Sobic009G037100--Sobic002G393100 Sobic009G037100--Sobic010G125000 Sobic005G165700 Sobic005G165700 Sobic009G037100--Sobic005G165700 Sobic009G037100--Sobic002G197700 Sobic006G248100--Sobic001G208500 Sobic006G248100--Sobic002G393100 Sobic003G051400 Sobic003G051400 Sobic006G248100--Sobic003G051400 Sobic006G248100--Sobic003G372600 Sobic006G248100--Sobic004G164800 Sobic006G248100--Sobic008G159000 Sobic006G248100--Sobic009G037100 Sobic002G401400 Sobic002G401400 Sobic006G248100--Sobic002G401400 Sobic006G248100--Sobic002G184700 Sobic002G197700--Sobic008G159000 Sobic002G197700--Sobic002G211300 Sobic002G197700--Sobic010G125000 Sobic002G197700--Sobic002G393100 Sobic002G197700--Sobic004G164800 Sobic002G197700--Sobic001G208500 Sobic002G197700--Sobic003G372600 Sobic002G197700--Sobic001G165600 Sobic002G197700--Sobic009G037100
Octagon: transcription factors


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