Gene annotation
Transcriptome id Sobic.003G051400.2
Synonym Sb03g004470
Functional annotation cytochrome c oxidase polypeptide Vc, putative, expressed
UniProt A0A1W0VVV2
Pfam -
Panther DB PTHR34372 PTHR34372:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40382 : Cytochrome c oxidase subunit Vc family protein
RAP-DB (Rice) LOC_Os12g37419.1 : cytochrome c oxidase polypeptide Vc, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU3Hr1G016280.1 , HORVU3Hr1G016280.2
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G437400 The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.010G269950 - -
3 Sobic.010G131500 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
4 Sobic.001G380800 cupin domain containing protein, expressed -
5 Sobic.006G248100 lipase, putative, expressed -
6 Sobic.002G393100 dehydrogenase/reductase, putative, expressed -
7 Sobic.001G208500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
8 Sobic.003G098800 osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
9 Sobic.001G058800 cysteine proteinase EP-B 1 precursor, putative, expressed -
10 Sobic.002G401400 glyoxalase family protein, putative, expressed -
11 Sobic.004G164800 poly synthetase 3, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
12 Sobic.010G142900 oleosin, putative, expressed -
13 Sobic.001G126900 oleosin, putative, expressed -
14 Sobic.003G144500 Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
15 Sobic.004G301800 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
16 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
17 Sobic.009G037100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -
18 Sobic.001G418500 glyoxalase family protein, putative, expressed -
19 Sobic.003G295600 DUF1264 domain containing protein, putative, expressed -
20 Sobic.003G398200 B3 DNA binding domain containing protein, expressed -


Gene co-expression network
sample Sobic003G051400 Sobic003G051400 Sobic003G437400 Sobic003G437400 Sobic003G051400--Sobic003G437400 Sobic010G269950 Sobic010G269950 Sobic003G051400--Sobic010G269950 Sobic010G131500 Sobic010G131500 Sobic003G051400--Sobic010G131500 Sobic001G380800 Sobic001G380800 Sobic003G051400--Sobic001G380800 Sobic006G248100 Sobic006G248100 Sobic003G051400--Sobic006G248100 Sobic002G393100 Sobic002G393100 Sobic003G051400--Sobic002G393100 Sobic001G208500 Sobic001G208500 Sobic003G051400--Sobic001G208500 Sobic003G098800 Sobic003G098800 Sobic003G051400--Sobic003G098800 Sobic001G058800 Sobic001G058800 Sobic003G051400--Sobic001G058800 Sobic003G437400--Sobic010G131500 Sobic003G437400--Sobic003G098800 Sobic003G437400--Sobic003G051400 Sobic003G437400--Sobic001G380800 Sobic004G301800 Sobic004G301800 Sobic003G437400--Sobic004G301800 Sobic003G437400--Sobic001G058800 Sobic003G437400--Sobic006G248100 Sobic003G295600 Sobic003G295600 Sobic003G437400--Sobic003G295600 Sobic003G437400--Sobic002G393100 Sobic010G269950--Sobic003G051400 Sobic001G126900 Sobic001G126900 Sobic010G269950--Sobic001G126900 Sobic002G401400 Sobic002G401400 Sobic010G269950--Sobic002G401400 Sobic003G144500 Sobic003G144500 Sobic010G269950--Sobic003G144500 Sobic010G142900 Sobic010G142900 Sobic010G269950--Sobic010G142900 Sobic010G269950--Sobic001G380800 Sobic001G418500 Sobic001G418500 Sobic010G269950--Sobic001G418500 Sobic010G269950--Sobic006G248100 Sobic006G143600 Sobic006G143600 Sobic010G269950--Sobic006G143600 Sobic010G131500--Sobic003G437400 Sobic010G131500--Sobic003G098800 Sobic009G250500 Sobic009G250500 Sobic010G131500--Sobic009G250500 Sobic010G131500--Sobic003G051400 Sobic010G131500--Sobic001G058800 Sobic010G131500--Sobic001G380800 Sobic003G398200 Sobic003G398200 Sobic010G131500--Sobic003G398200 Sobic010G131500--Sobic006G248100 Sobic010G131500--Sobic004G301800 Sobic001G380800--Sobic004G301800 Sobic001G380800--Sobic010G142900 Sobic001G380800--Sobic003G295600 Sobic001G380800--Sobic001G418500 Sobic001G380800--Sobic003G437400 Sobic001G380800--Sobic002G401400 Sobic001G380800--Sobic001G126900 Sobic001G380800--Sobic002G393100 Sobic001G380800--Sobic003G098800 Sobic006G248100--Sobic001G208500 Sobic006G248100--Sobic002G393100 Sobic006G248100--Sobic003G051400 Sobic003G372600 Sobic003G372600 Sobic006G248100--Sobic003G372600 Sobic004G164800 Sobic004G164800 Sobic006G248100--Sobic004G164800 Sobic008G159000 Sobic008G159000 Sobic006G248100--Sobic008G159000 Sobic009G037100 Sobic009G037100 Sobic006G248100--Sobic009G037100 Sobic006G248100--Sobic002G401400 Sobic002G184700 Sobic002G184700 Sobic006G248100--Sobic002G184700 Sobic002G393100--Sobic001G208500 Sobic002G393100--Sobic004G164800 Sobic002G197700 Sobic002G197700 Sobic002G393100--Sobic002G197700 Sobic002G393100--Sobic003G372600 Sobic002G393100--Sobic009G037100 Sobic002G393100--Sobic008G159000 Sobic002G393100--Sobic006G248100 Sobic002G211300 Sobic002G211300 Sobic002G393100--Sobic002G211300 Sobic002G393100--Sobic001G380800 Sobic001G208500--Sobic003G372600 Sobic001G208500--Sobic002G393100 Sobic001G208500--Sobic004G164800 Sobic001G208500--Sobic002G211300 Sobic001G208500--Sobic008G159000 Sobic001G208500--Sobic002G184700 Sobic001G208500--Sobic009G037100 Sobic001G208500--Sobic006G248100 Sobic001G208500--Sobic002G197700 Sobic003G098800--Sobic003G437400 Sobic003G098800--Sobic010G131500 Sobic003G098800--Sobic003G295600 Sobic003G098800--Sobic001G380800 Sobic003G283700 Sobic003G283700 Sobic003G098800--Sobic003G283700 Sobic003G098800--Sobic004G301800 Sobic002G391100 Sobic002G391100 Sobic003G098800--Sobic002G391100 Sobic003G098800--Sobic003G051400 Sobic003G098800--Sobic010G142900 Sobic005G165700 Sobic005G165700 Sobic001G058800--Sobic005G165700 Sobic001G058800--Sobic003G437400 Sobic001G058800--Sobic001G380800 Sobic001G058800--Sobic009G037100 Sobic001G058800--Sobic010G131500 Sobic001G058800--Sobic004G164800 Sobic001G058800--Sobic003G051400 Sobic001G058800--Sobic001G208500 Sobic001G058800--Sobic003G372600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.