Gene annotation
| Transcriptome id | Sobic.004G301800.1 |
|---|---|
| Synonym | BETAVPE, BETA-VPE, Sb04g033520 |
| Functional annotation | vacuolar-processing enzyme precursor, putative, expressed |
| UniProt | C5XS49 |
| Pfam | PF01650 |
| Panther DB | PTHR12000 PTHR12000:SF16 |
| NCBI CDD | - |
| KEGG Orthology | K01369; legumain |
| Gene Ontology | GO:0008233; peptidase activity GO:0006508proteolysis |
Orthologs (automatic annotation)
| TAIR | AT1G62710 : beta vacuolar processing enzyme |
|---|---|
| RAP-DB (Rice) | LOC_Os02g43010.1 : vacuolar-processing enzyme precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a010421 , Zm00025a020956 |
| Brachypodium | PNT69139 , PNT61570 , KQK00530 |
| Barley | HORVU2Hr1G092080.15 , HORVU2Hr1G092080.1 , HORVU2Hr1G091880.2 , HORVU2Hr1G091880.1 |
| Wheat | TraesCS6A02G238500 , TraesCS6B02G285900 , TraesCS2B02G404300 , TraesCS6D02G220900 , TraesCS2A02G386700 , TraesCS2A02G385900 , TraesCS2D02G383500 , TraesCS2B02G404000 |
| Populus | - |
JBrowse
| Sobic.004G301800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G380800 | cupin domain containing protein, expressed | - |
| 2 | Sobic.010G142900 | oleosin, putative, expressed | - |
| 3 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 4 | Sobic.001G418500 | glyoxalase family protein, putative, expressed | - |
| 5 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
| 6 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 7 | Sobic.003G098800 | osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | - |
| 8 | Sobic.002G401400 | glyoxalase family protein, putative, expressed | - |
| 9 | Sobic.003G437400 | The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 10 | Sobic.001G544400 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@oleosin, putative, expressed | - |
| 11 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 12 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 13 | Sobic.002G393100 | dehydrogenase/reductase, putative, expressed | - |
| 14 | Sobic.003G051400 | cytochrome c oxidase polypeptide Vc, putative, expressed | - |
| 15 | Sobic.004G164800 | poly synthetase 3, putative, expressed | K10798: poly [ADP-ribose] polymerase 2/3/4 |
| 16 | Sobic.001G058800 | cysteine proteinase EP-B 1 precursor, putative, expressed | - |
| 17 | Sobic.003G236200 | oleosin, putative, expressed | - |
| 18 | Sobic.009G037100 | oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed | - |
| 19 | Sobic.010G131500 | -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed | - |
| 20 | Sobic.010G074940 | - | - |
Gene co-expression network
Octagon: transcription factors
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