Gene annotation
| Transcriptome id | Sobic.010G007800.1 |
|---|---|
| Synonym | Sb10g000930, |
| Functional annotation | Up-reguralion under drought (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) late embryogenesis abundant group 1, putative, expressed |
| UniProt | C5Z2P9 |
| Pfam | PF03760 |
| Panther DB | PTHR33493 PTHR33493:SF6 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0009790; embryo development |
Orthologs (automatic annotation)
| TAIR | AT1G32560 : Late embryogenesis abundant protein, group 1 protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g02040.1 : late embryogenesis abundant group 1, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.010G007800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G104500 | small hydrophilic plant seed protein, putative, expressed | - |
| 2 | Sobic.001G497700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 3 | Sobic.009G104600 | small hydrophilic plant seed protein, putative, expressed | - |
| 4 | Sobic.007G218500 | (50.9% identity with SbCCoAOMT/68.5% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed | K18883: tricin synthase |
| 5 | Sobic.004G091600 | ethylene receptor, putative, expressed | K14509: ETR, ethylene receptor |
| 6 | Sobic.002G185100 | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed | K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| 7 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 8 | Sobic.005G167650 | - | - |
| 9 | Sobic.005G165700 | AMBP1 - Antimicrobial peptide MBP-1 family protein precursor, expressed | - |
| 10 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 11 | Sobic.010G269950 | - | - |
| 12 | Sobic.002G401400 | glyoxalase family protein, putative, expressed | - |
| 13 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 14 | Sobic.002G046000 | zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed | - |
| 15 | Sobic.010G256100 | LTPL154 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 16 | Sobic.009G037100 | oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed | - |
| 17 | Sobic.003G395000 | cysteine proteinase EP-B 1 precursor, putative, expressed | - |
| 18 | Sobic.008G159000 | - | - |
| 19 | Sobic.003G061500 | small hydrophilic plant seed protein, putative, expressed | - |
| 20 | Sobic.007G153600 | similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed | K17279: receptor expression-enhancing protein 5/6 |
Gene co-expression network
Octagon: transcription factors
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