Gene annotation
| Transcriptome id | Sobic.003G130400.1 |
|---|---|
| Synonym | Sb03g011090, ECP63, ATECP63 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) Up-reguralion under drought (PubMedID : 24916767) embryonic protein DC-8, putative, expressed |
| UniProt | C5XH89 |
| Pfam | - |
| Panther DB | - |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G36640 : embryonic cell protein 63 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g16920.1 : embryonic protein DC-8, putative, expressed |
| MaizeGDB (Corn) | Zm00025a035208 |
| Brachypodium | - |
| Barley | - |
| Wheat | TraesCS3A02G188700 , TraesCS3B02G217900 |
| Populus | - |
JBrowse
| Sobic.003G130400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G041900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dehydrin, putative, expressed | - |
| 2 | Sobic.010G133000 | late embryogenesis abundant group 1, putative, expressed | - |
| 3 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 4 | Sobic.002G185100 | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed | K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| 5 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 6 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 7 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 8 | Sobic.010G007800 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant group 1, putative, expressed | - |
| 9 | Sobic.009G104600 | small hydrophilic plant seed protein, putative, expressed | - |
| 10 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
| 11 | Sobic.006G143600 | similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 12 | Sobic.001G497700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 13 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 14 | Sobic.010G142900 | oleosin, putative, expressed | - |
| 15 | Sobic.001G418500 | glyoxalase family protein, putative, expressed | - |
| 16 | Sobic.007G153600 | similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed | K17279: receptor expression-enhancing protein 5/6 |
| 17 | Sobic.010G269950 | - | - |
| 18 | Sobic.002G401400 | glyoxalase family protein, putative, expressed | - |
| 19 | Sobic.009G104500 | small hydrophilic plant seed protein, putative, expressed | - |
| 20 | Sobic.001G544400 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@oleosin, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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