Gene annotation
Transcriptome id Sobic.009G104500.1,Sobic.009G104500.2
Synonym EM6, GEA6, ATEM6, Sb09g016810
Functional annotation small hydrophilic plant seed protein, putative, expressed
UniProt A0A1B6P7W0 , A0A1B6P877
Pfam PF00477
Panther DB PTHR34671 PTHR34671:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G40170 : Stress induced protein
RAP-DB (Rice) LOC_Os05g28210.1 : small hydrophilic plant seed protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK06778
Barley HORVU1Hr1G059870.4 , HORVU1Hr1G059870.5 , HORVU1Hr1G059870.2 , HORVU1Hr1G059870.3
Wheat TraesCS1B02G237600 , TraesCS1A02G224100 , TraesCS1D02G226000 , TraesCS1A02G224500 , TraesCS1A02G224600 , TraesCS1A02G224400 , TraesCS1D02G225900 , TraesCS1A02G224200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G104500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G218500 (50.9% identity with SbCCoAOMT/68.5% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
2 Sobic.010G007800 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant group 1, putative, expressed -
3 Sobic.003G144500 Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
4 Sobic.002G401400 glyoxalase family protein, putative, expressed -
5 Sobic.005G165700 AMBP1 - Antimicrobial peptide MBP-1 family protein precursor, expressed -
6 Sobic.001G497700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed -
7 Sobic.001G126900 oleosin, putative, expressed -
8 Sobic.009G104600 small hydrophilic plant seed protein, putative, expressed -
9 Sobic.008G159000 - -
10 Sobic.004G091600 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
11 Sobic.010G269950 - -
12 Sobic.003G395000 cysteine proteinase EP-B 1 precursor, putative, expressed -
13 Sobic.002G046000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
14 Sobic.009G037100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -
15 Sobic.006G248100 lipase, putative, expressed -
16 Sobic.004G164800 poly synthetase 3, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
17 Sobic.002G185100 succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
18 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
19 Sobic.001G418500 glyoxalase family protein, putative, expressed -
20 Sobic.002G184700 expressed protein -


Gene co-expression network
sample Sobic009G104500 Sobic009G104500 Sobic007G218500 Sobic007G218500 Sobic009G104500--Sobic007G218500 Sobic010G007800 Sobic010G007800 Sobic009G104500--Sobic010G007800 Sobic003G144500 Sobic003G144500 Sobic009G104500--Sobic003G144500 Sobic002G401400 Sobic002G401400 Sobic009G104500--Sobic002G401400 Sobic005G165700 Sobic005G165700 Sobic009G104500--Sobic005G165700 Sobic001G497700 Sobic001G497700 Sobic009G104500--Sobic001G497700 Sobic001G126900 Sobic001G126900 Sobic009G104500--Sobic001G126900 Sobic009G104600 Sobic009G104600 Sobic009G104500--Sobic009G104600 Sobic008G159000 Sobic008G159000 Sobic009G104500--Sobic008G159000 Sobic007G218500--Sobic009G104500 Sobic007G218500--Sobic008G159000 Sobic002G046000 Sobic002G046000 Sobic007G218500--Sobic002G046000 Sobic001G344300 Sobic001G344300 Sobic007G218500--Sobic001G344300 Sobic002G184700 Sobic002G184700 Sobic007G218500--Sobic002G184700 Sobic009G037100 Sobic009G037100 Sobic007G218500--Sobic009G037100 Sobic003G372600 Sobic003G372600 Sobic007G218500--Sobic003G372600 Sobic007G218500--Sobic002G401400 Sobic007G218500--Sobic005G165700 Sobic010G007800--Sobic009G104500 Sobic010G007800--Sobic001G497700 Sobic010G007800--Sobic009G104600 Sobic010G007800--Sobic007G218500 Sobic004G091600 Sobic004G091600 Sobic010G007800--Sobic004G091600 Sobic002G185100 Sobic002G185100 Sobic010G007800--Sobic002G185100 Sobic010G007800--Sobic003G144500 Sobic005G167650 Sobic005G167650 Sobic010G007800--Sobic005G167650 Sobic010G007800--Sobic005G165700 Sobic003G144500--Sobic002G401400 Sobic003G144500--Sobic001G126900 Sobic001G418500 Sobic001G418500 Sobic003G144500--Sobic001G418500 Sobic010G142900 Sobic010G142900 Sobic003G144500--Sobic010G142900 Sobic003G144500--Sobic009G037100 Sobic001G380800 Sobic001G380800 Sobic003G144500--Sobic001G380800 Sobic010G269950 Sobic010G269950 Sobic003G144500--Sobic010G269950 Sobic004G164800 Sobic004G164800 Sobic003G144500--Sobic004G164800 Sobic003G395000 Sobic003G395000 Sobic003G144500--Sobic003G395000 Sobic002G401400--Sobic001G418500 Sobic002G401400--Sobic003G144500 Sobic002G401400--Sobic001G126900 Sobic002G401400--Sobic010G142900 Sobic002G401400--Sobic001G380800 Sobic002G401400--Sobic009G037100 Sobic002G401400--Sobic004G164800 Sobic002G401400--Sobic003G395000 Sobic002G393100 Sobic002G393100 Sobic002G401400--Sobic002G393100 Sobic001G498900 Sobic001G498900 Sobic005G165700--Sobic001G498900 Sobic005G165700--Sobic009G037100 Sobic001G058800 Sobic001G058800 Sobic005G165700--Sobic001G058800 Sobic005G165700--Sobic002G046000 Sobic005G165700--Sobic004G164800 Sobic006G248000 Sobic006G248000 Sobic005G165700--Sobic006G248000 Sobic005G165700--Sobic003G372600 Sobic005G165700--Sobic003G144500 Sobic010G198900 Sobic010G198900 Sobic005G165700--Sobic010G198900 Sobic001G497700--Sobic009G104600 Sobic001G497700--Sobic010G007800 Sobic001G497700--Sobic009G104500 Sobic001G497700--Sobic002G185100 Sobic001G144900 Sobic001G144900 Sobic001G497700--Sobic001G144900 Sobic001G497700--Sobic005G167650 Sobic001G497700--Sobic007G218500 Sobic001G497700--Sobic004G091600 Sobic003G130400 Sobic003G130400 Sobic001G497700--Sobic003G130400 Sobic001G126900--Sobic002G401400 Sobic001G126900--Sobic010G142900 Sobic001G126900--Sobic003G144500 Sobic001G126900--Sobic001G418500 Sobic001G126900--Sobic001G380800 Sobic001G126900--Sobic010G269950 Sobic006G143600 Sobic006G143600 Sobic001G126900--Sobic006G143600 Sobic003G295600 Sobic003G295600 Sobic001G126900--Sobic003G295600 Sobic004G301800 Sobic004G301800 Sobic001G126900--Sobic004G301800 Sobic009G104600--Sobic001G497700 Sobic009G104600--Sobic010G007800 Sobic009G104600--Sobic009G104500 Sobic009G104600--Sobic002G185100 Sobic009G104600--Sobic001G144900 Sobic009G104600--Sobic005G167650 Sobic009G104600--Sobic003G130400 Sobic009G104600--Sobic007G218500 Sobic009G104600--Sobic010G269950 Sobic002G197700 Sobic002G197700 Sobic008G159000--Sobic002G197700 Sobic008G159000--Sobic004G164800 Sobic002G211300 Sobic002G211300 Sobic008G159000--Sobic002G211300 Sobic001G208500 Sobic001G208500 Sobic008G159000--Sobic001G208500 Sobic008G159000--Sobic003G372600 Sobic008G159000--Sobic009G037100 Sobic010G125000 Sobic010G125000 Sobic008G159000--Sobic010G125000 Sobic008G159000--Sobic002G393100 Sobic008G159000--Sobic002G184700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.