Gene annotation
| Transcriptome id | Sobic.010G041900.1 |
|---|---|
| Synonym | Sb10g003700, XERO1, |
| Functional annotation | Up-reguralion under drought (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) dehydrin, putative, expressed |
| UniProt | C5Z4B8 |
| Pfam | PF00257 |
| Panther DB | PTHR33346 PTHR33346:SF3 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0009415; response to water GO:0006950response to stress |
Orthologs (automatic annotation)
| TAIR | AT3G50980 : dehydrin xero 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os11g26570.1 : dehydrin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a043321 , Zm00025a050005 |
| Brachypodium | KQJ88958 , KQJ88959 , KQK17893 , KQK09367 |
| Barley | HORVU6Hr1G084070.10 , HORVU6Hr1G084070.13 , HORVU6Hr1G084070.12 , HORVU5Hr1G103460.3 , HORVU5Hr1G103460.2 , HORVU6Hr1G084070.11 , HORVU5Hr1G092150.1 , HORVU6Hr1G084070.9 , HORVU5Hr1G092100.1 |
| Wheat | TraesCS6B02G383500 , TraesCS5B02G372200 , TraesCS6B02G383500 , TraesCS5A02G424700 , TraesCS5B02G426800 , TraesCSU02G086200 , TraesCS5D02G379300 , TraesCS6A02G059800 , TraesCS5A02G369800 , TraesCS6D02G332900 , TraesCS6D02G332900 , TraesCS5D02G379200 , TraesCSU02G122200 , TraesCS6A02G350500 |
| Populus | - |
JBrowse
| Sobic.010G041900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 2 | Sobic.010G133000 | late embryogenesis abundant group 1, putative, expressed | - |
| 3 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 4 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 5 | Sobic.002G317500 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 6 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 7 | Sobic.003G270200 | dehydrin family protein, expressed | - |
| 8 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 9 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
| 10 | Sobic.006G143600 | similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 11 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 12 | Sobic.001G017500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | - |
| 13 | Sobic.004G092700 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 14 | Sobic.010G142900 | oleosin, putative, expressed | - |
| 15 | Sobic.002G185100 | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed | K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| 16 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 17 | Sobic.002G118300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed | - |
| 18 | Sobic.001G418500 | glyoxalase family protein, putative, expressed | - |
| 19 | Sobic.001G544400 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@oleosin, putative, expressed | - |
| 20 | Sobic.007G153600 | similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed | K17279: receptor expression-enhancing protein 5/6 |
Gene co-expression network
Octagon: transcription factors
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