Gene annotation
| Transcriptome id | Sobic.001G017500.1 |
|---|---|
| Synonym | HSD5, AtHSD5, Sb01g001700 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed |
| UniProt | A0A1B6QGW1 |
| Pfam | PF13561 |
| Panther DB | PTHR24322 PTHR24322:SF257 |
| NCBI CDD | KOG1205; Predicted dehydrogenase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G10020 : hydroxysteroid dehydrogenase 5 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g62590.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a008977 |
| Brachypodium | KQK12195 |
| Barley | HORVU5Hr1G120110.1 , HORVU5Hr1G120110.2 , HORVU5Hr1G120110.3 |
| Wheat | TraesCS5B02G530500 , TraesCS5D02G529200 , TraesCS4A02G343700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G391100 | Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed | K11188: peroxiredoxin 6 |
| 2 | Sobic.002G118300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed | - |
| 3 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 4 | Sobic.003G236200 | oleosin, putative, expressed | - |
| 5 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 6 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 7 | Sobic.006G107900 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 8 | Sobic.003G098800 | osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | - |
| 9 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
| 10 | Sobic.002G302300 | cysteine proteinase A494 precursor, putative, expressed | K01373: cathepsin F |
| 11 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 12 | Sobic.010G142900 | oleosin, putative, expressed | - |
| 13 | Sobic.004G301800 | vacuolar-processing enzyme precursor, putative, expressed | K01369: legumain |
| 14 | Sobic.003G400400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine proteinase inhibitor precursor protein, putative, expressed | - |
| 15 | Sobic.007G075250 | - | - |
| 16 | Sobic.006G143600 | similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 17 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 18 | Sobic.001G380800 | cupin domain containing protein, expressed | - |
| 19 | Sobic.002G317500 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 20 | Sobic.001G418500 | glyoxalase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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