Gene annotation
| Transcriptome id | Sobic.002G302300.1,Sobic.002G302300.2 |
|---|---|
| Synonym | Sb02g033270 |
| Functional annotation | cysteine proteinase A494 precursor, putative, expressed |
| UniProt | C5X8J7 |
| Pfam | PF08246 PF00112 |
| Panther DB | PTHR12411 PTHR12411:SF316 |
| NCBI CDD | KOG1542; Cysteine proteinase Cathepsin F |
| KEGG Orthology | K01373; cathepsin F |
| Gene Ontology | GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis |
Orthologs (automatic annotation)
| TAIR | AT3G54940 : Papain family cysteine protease |
|---|---|
| RAP-DB (Rice) | LOC_Os07g29760.1 : cysteine proteinase A494 precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a014618 |
| Brachypodium | KQK16258 |
| Barley | HORVU2Hr1G036930.1 , HORVU2Hr1G036930.2 , HORVU4Hr1G082210.1 , HORVU4Hr1G082210.2 , HORVU7Hr1G074340.2 , HORVU7Hr1G074340.4 , HORVU7Hr1G069280.5 , HORVU7Hr1G074340.1 , HORVU7Hr1G074340.3 , HORVU7Hr1G069280.4 , HORVU7Hr1G069280.1 , HORVU5Hr1G082810.1 |
| Wheat | TraesCS2D02G200500 , TraesCS2A02G187400 , TraesCS2D02G272400 , TraesCS2B02G219900 , TraesCS2A02G273100 |
| Populus | - |
JBrowse
| Sobic.002G302300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G075250 | - | - |
| 2 | Sobic.009G209400 | ubiquinone oxidoreductase, putative, expressed | K03940: NADH dehydrogenase (ubiquinone) Fe-S protein 7 |
| 3 | Sobic.001G088600 | universal stress protein domain containing protein, putative, expressed | - |
| 4 | Sobic.001G017500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | - |
| 5 | Sobic.002G111400 | heavy metal-associated domain containing protein, expressed | - |
| 6 | Sobic.002G118300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed | - |
| 7 | Sobic.002G317500 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 8 | Sobic.006G107900 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 9 | Sobic.002G391100 | Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed | K11188: peroxiredoxin 6 |
| 10 | Sobic.003G236200 | oleosin, putative, expressed | - |
| 11 | Sobic.010G106601 | - | K09422: transcription factor MYB, plant |
| 12 | Sobic.003G363400 | bZIP transcription factor, putative, expressed | K14432: ABA responsive element binding factor |
| 13 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 14 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 15 | Sobic.009G191801 | - | - |
| 16 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 17 | Sobic.001G243666 | - | - |
| 18 | Sobic.003G400400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine proteinase inhibitor precursor protein, putative, expressed | - |
| 19 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 20 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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