Gene annotation
| Transcriptome id | Sobic.009G209400.1 |
|---|---|
| Synonym | Sb09g026580 |
| Functional annotation | ubiquinone oxidoreductase, putative, expressed |
| UniProt | C5YUG3 |
| Pfam | PF01058 |
| Panther DB | PTHR11995 PTHR11995:SF19 |
| NCBI CDD | KOG1687; NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit |
| KEGG Orthology | K03940; NADH dehydrogenase (ubiquinone) Fe-S protein 7 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G11770 : NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial |
|---|---|
| RAP-DB (Rice) | LOC_Os01g52214.1 : ubiquinone oxidoreductase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a038982 , Zm00025a027766 |
| Brachypodium | KQK09512 , KQK05223 |
| Barley | HORVU3Hr1G068360.2 , HORVU3Hr1G068360.8 , HORVU3Hr1G068360.9 , HORVU3Hr1G068360.3 , HORVU3Hr1G068360.1 , HORVU3Hr1G068360.4 |
| Wheat | TraesCS3D02G287400 , TraesCS3B02G322300 , TraesCS1D02G357100 , TraesCS3A02G287600 , TraesCS1B02G368900 , TraesCS1B02G368900 , TraesCS1A02G353000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G317500 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 2 | Sobic.002G302300 | cysteine proteinase A494 precursor, putative, expressed | K01373: cathepsin F |
| 3 | Sobic.007G075250 | - | - |
| 4 | Sobic.002G111400 | heavy metal-associated domain containing protein, expressed | - |
| 5 | Sobic.001G088600 | universal stress protein domain containing protein, putative, expressed | - |
| 6 | Sobic.001G017500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | - |
| 7 | Sobic.004G092700 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 8 | Sobic.002G118300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed | - |
| 9 | Sobic.009G191801 | - | - |
| 10 | Sobic.010G041900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dehydrin, putative, expressed | - |
| 11 | Sobic.006G107900 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 12 | Sobic.010G106601 | - | K09422: transcription factor MYB, plant |
| 13 | Sobic.003G236200 | oleosin, putative, expressed | - |
| 14 | Sobic.002G391100 | Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed | K11188: peroxiredoxin 6 |
| 15 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 16 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 17 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 18 | Sobic.001G243666 | - | - |
| 19 | Sobic.003G363400 | bZIP transcription factor, putative, expressed | K14432: ABA responsive element binding factor |
| 20 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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